Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
1 - 10 of 26
- Unraveling the role of the immune system in the development of exuberant granulation tissue in horse woundsFrom1 Jan 2024 → TodayFunding: BOF - doctoral mandates
- Extracellular vesicles from follicular fluid are key for successful development of fresh and vitrified equine oocytesFrom16 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- qPCR system for NGS library quality control, gene expression measurement, hybridization curve, and melting curve analysisFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Cofunding core facility - Ghent Light Microscopy (GLiM)From1 Jul 2022 → TodayFunding: BOF - research organisations
- Cofunding core facility - UGent NGS CoreFrom1 Jul 2022 → TodayFunding: BOF - research organisations
- Modular high-end mass spectrometer for ultrasensitive quantification and imaging of small organic molecules in cross-health research - MSsmall-XHFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Empirical exploration of novel DNA probes for hybridization to tandem repeatsFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Nanopore sequencing of complete pharmacogenes after CRISPR/Cas9 enrichment in tamoxifen and clopidogrel patients allowing enhanced haplotyping and continuous scale machine learning efficacy prediction.From1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- PEA histone modification proteomicsFrom1 Mar 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciencesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
Publications
171 - 180 of 274
- Assessing the impact of minimizing arginine conversion in fully defined SILAC culture medium in human embryonic stem cells(2016)
Authors: Ellen Scheerlinck, Katleen Van Steendam, Simon Daled, Elisabeth Govaert, Liesbeth Vossaert, Paulien Meert, Filip Van Nieuwerburgh, Ann Van Soom, Luc Peelman, Maarten Dhaenens, et al.
Pages: 2605 - 2614 - The quorum sensing inhibitor hamamelitannin increases antibiotic susceptibility of Staphylococcus aureus biofilms by affecting peptidoglycan biosynthesis and eDNA release(2016)
Authors: Gilles Brackman, Koen Breyne, Arno Vermote, Filip Van Nieuwerburgh
- Divergence between the highly virulent zoonotic pathogen Helicobacter heilmannii and its closest relative, the low-virulence 'Helicobacter ailurogastricus' sp. nov.(2016)
Authors: Myrthe Joosten, Sara Lindén, Mirko Rossi, Alfred Chin Yen Tay, Emma Skoog, Médea Padra, Fanny Peters, Tim Perkins, Peter Vandamme, Filip Van Nieuwerburgh, et al.
Pages: 293 - 306 - Uncovering the novel role of mTORC2 subunit of the PI3K/AKT/mTORC pathway in establishing naive pluripotency in human embryonic stem cells(2016)Volume: 31
Authors: Sharat Warrier, Margot Van der Jeught, Galbha Duggal, Jasin Taelman, Sylvie Lierman, Susana Marina Chuva de Sousa Lopes, Ann Van Soom, Luc Peelman, Filip Van Nieuwerburgh, Dieter De Coninck, et al.
Pages: 470 - 470 - Statistical framework for detection of genetically modified organisms based on Next Generation Sequencing(2016)
Authors: Sander Willems, Marie-Alice Fraiture, Dieter Deforce, Sigrid De Keersmaecker, Philippe Herman, Marc De Loose, Tom Ruttink, Filip Van Nieuwerburgh, Nancy Roosens
Pages: 788 - 798 - Massive parallel sequencing uncovers chromosomal mosaicism in human embryonic stem cells in both primed and naive culture conditions(2016)Volume: 31
Authors: Mina Popovic, Margot Van der Jeught, Filip Van Nieuwerburgh
Pages: 76 - 76 - Microbial diversity and metabolite composition of Belgian red-brown acidic ales(2016)
Authors: Isabel Snauwaert, Sanne Roels, Filip Van Nieuwerburgh, Anita Van Landschoot, Luc De Vuyst, Peter Vandamme
Pages: 1 - 11 - Suboptimal culture conditions induce more deviations in gene expression in male than female bovine blastocysts(2016)
Authors: Sonia Heras García, Dieter De Coninck, Mario Van Poucke, Karen Goossens, Osvaldo Américo Bogado Pascottini, Filip Van Nieuwerburgh, Dieter Deforce, Jo Leroy, Alfonso Gutierrez-Adan, Luc Peelman, et al.
- Preimplantation genetic diagnosis (PGD) for translocation carriers using whole genome screening by microarray analysis at the blastocyst stage(2016)Volume: 31
Authors: CHRISTODOULOS CHRISTODOULOU, Annelies Dheedene, Ilse De Croo, Björn Heindryckx, Lieselot Deleye, Filip Van Nieuwerburgh, Dieter Deforce, Petra De Sutter, Björn Menten, Etienne Van den Abbeel
Pages: 386 - 387 - Performance of a TthPrimPol-based whole genome amplification kit for copy number alteration detection using massively parallel sequencing(2016)
Authors: Lieselot Deleye, Dieter De Coninck, Annelies Dheedene, Dieter Deforce, Filip Van Nieuwerburgh
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)