Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
1 - 10 of 26
- Unraveling the role of the immune system in the development of exuberant granulation tissue in horse woundsFrom1 Jan 2024 → TodayFunding: BOF - doctoral mandates
- Extracellular vesicles from follicular fluid are key for successful development of fresh and vitrified equine oocytesFrom16 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- qPCR system for NGS library quality control, gene expression measurement, hybridization curve, and melting curve analysisFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Cofunding core facility - Ghent Light Microscopy (GLiM)From1 Jul 2022 → TodayFunding: BOF - research organisations
- Cofunding core facility - UGent NGS CoreFrom1 Jul 2022 → TodayFunding: BOF - research organisations
- Modular high-end mass spectrometer for ultrasensitive quantification and imaging of small organic molecules in cross-health research - MSsmall-XHFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Empirical exploration of novel DNA probes for hybridization to tandem repeatsFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Nanopore sequencing of complete pharmacogenes after CRISPR/Cas9 enrichment in tamoxifen and clopidogrel patients allowing enhanced haplotyping and continuous scale machine learning efficacy prediction.From1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- PEA histone modification proteomicsFrom1 Mar 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciencesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
Publications
161 - 170 of 274
- STR profiling and Copy Number Variation analysis on single, preserved cells using current Whole Genome Amplification methods(2017)
Authors: Ann-Sophie Vander Plaetsen, Lieselot Deleye, Senne Cornelis, Laurentijn Tilleman, Filip Van Nieuwerburgh, Dieter Deforce
- RMNE calculation in forensic profiles with a high number of loci and allelic drop-outs using polynomial expansion(2017)
Authors: Sander Willems, Senne Cornelis, Yannick Gansemans, Bart Broeckx, Dieter De Coninck, Christophe Van Neste, Maarten Dhaenens, Dieter Deforce, Filip Van Nieuwerburgh
Pages: E14 - E16 - Preimplantation genetic diagnosis for chromosomal rearrangements with the use of array comparative genomic hybridization at the blastocyst stage(2017)
Authors: CHRISTODOULOS CHRISTODOULOU, Annelies Dheedene, Filip Van Nieuwerburgh, Dieter Deforce
Pages: 212 - 219 - Direct comparison of distinct naive pluripotent states in human embryonic stem cells(2017)
Authors: Sharat Warrier, Margot Van der Jeught, Galbha Duggal, Laurentijn Tilleman, Ella Sutherland, Jasin Taelman, Mina Popovic, Sylvie Lierman, Susana Marina Chuva de Sousa Lopes, Ann Van Soom, et al.
- Dynamic epigenetic changes to VHL occur with sunitinib in metastatic clear cell renal cancer(2016)
Authors: Grant D Stewart, Thomas Powles, Christophe Van Neste, Alison Meynert, Fiach O'Mahony, Alexander Laird, Dieter Deforce, Filip Van Nieuwerburgh, Geert Trooskens, David J Harrison
Pages: 25241 - 25250 - Impact of sugar syrup and pollen diet on the bacterial diversity in the gut of indoor-reared bumblebees (Bombus terrestris)(2016)
Authors: Annelies Billiet, Ivan Meeus, Filip Van Nieuwerburgh, Dieter Deforce, Felix Wäckers, Guy Smagghe
Pages: 548 - 560 - Unique long non-coding RNA expression signature in ETV6/RUNX1-driven B-cell precursor acute lymphoblastic leukemia(2016)
Authors: Farzaneh Ghazavi, Wouter Van Loocke, Annelynn Wallaert, Hetty Helsmoortel, Alina Ferster, Marleen Bakkus, Geneviève Plat, Eric Delabesse, Anne Uyttebroeck, Filip Van Nieuwerburgh, et al.
Pages: 73769 - 73780 - Forensic Loci Allele Database (FLAD) : automatically generated, permanent identifiers for sequenced forensic alleles(2016)
Authors: Christophe Van Neste, Dieter Deforce, Filip Van Nieuwerburgh
Pages: e1 - e3 - Toward the most ideal case-control design with related and unrelated dogs in whole-exome sequencing studies(2016)
Authors: Bart Broeckx, Frank Coopman, Geert Verhoeven, Sarah De Keulenaer, Ellen De Meester, Valérie Bavegems, Pascale Smets, Bernadette Van Ryssen, Filip Van Nieuwerburgh, Dieter Deforce
Pages: 200 - 207 - The equine embryo influences immune related gene expression in the oviduct(2016)
Authors: Katrien Smits, Dieter De Coninck, Filip Van Nieuwerburgh, Jan Govaere, Mario Van Poucke, Luc Peelman, Dieter Deforce, Ann Van Soom
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)