Researcher
Klaas Vandepoele
- Keywords (Ghent University):systems biology, Plant biotechnology, bio-informatics
- Disciplines (Flanders Institute for Biotechnology):Cell death and senescence, Invasion biology, Epigenomics, Auto-ecology, Biogeography and phylogeography
- Disciplines (Ghent University):Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Systems biology not elsewhere classified, Plant cell and molecular biology, Single-cell data analysis, Analysis of next-generation sequence data, Bioinformatics and computational biology not elsewhere classified, Bioinformatics data integration and network biology
- See also: Klaas Vandepoele (Flanders Institute for Biotechnology)
Affiliations
- Vandepoele Lab (Research group)
Responsible
From1 Jan 2018 → Today - De Veylder Lab (Research group)
Member
From1 Jan 2017 → 31 Dec 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Dec 2000 → Today
Infrastructure
1 - 1 of 1
- ELIXIR Belgium (Consortium partner)
Projects
1 - 10 of 18
- The secret garden: diatom adaptation and evolution in benthic environmentsFrom1 Jan 2023 → TodayFunding: BOF - projects
- Assessment of the roles of endogenous and environmental cues controlling cell size distribution and sexual reproduction in benthic diatom populationsFrom1 Nov 2022 → TodayFunding: FWO fellowships
- Charting the functional components of the diverse sexual life cycles in diatomsFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Identification of the gene regulatory networks controlling vascular development in plants – a comparative approach at single-cell resolutionFrom1 Oct 2021 → 14 Oct 2022Funding: FWO junior postdoctoral fellowship
- Enzyme biodiscovery pipeline optimisation via toolbox developmentFrom1 Sep 2021 → TodayFunding: VLAIO - Catalisti - cSBO
- Software development for gene-trait discovery and prioritization in agricultural biotechnology using single-cell genomicsFrom1 Jun 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Reproductive barriers, interspecific gene flow and diversification in a globally distributed pennate diatomFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- From model species to crop: enhancing the translation of functional traits in plants using an integrative network-based approach.From1 Oct 2019 → TodayFunding: BOF - projects
- ELIXIR Infrastructure for Data and Services to strengthen Life-Sciences Research in FlandersFrom1 Jan 2019 → 31 Dec 2022Funding: FWO International research infrastructure (IRI)
Publications
41 - 50 of 133
- Virus-host coexistence in phytoplankton through the genomic lens(2020)
Authors: Sheree Yau, Marc Krasovec, L. Felipe Benites, Stephane Rombauts, Mathieu Groussin, Emmelien Vancaester, Jean-Marc Aury, Evelyne Derelle, Yves Desdevises, Marie-Line Escande, et al.
- The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms(2020)
Authors: Cristina Maria Osuna Cruz, Gust Bilcke, Emmelien Vancaester, Sam De Decker, Atle M. Bones, Per Winge, Nicole Poulsen, Petra Bulánková, Bram Verhelst, Sien Audoor, et al.
- Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds(2020)
Authors: Andrea Del Cortona, Christopher J. Jackson, François Bucchini, Michiel Van Bel, Sofie D'hondt, Pavel Skaloud, Charles F. Delwiche, Andrew H. Knoll, John A. Raven, Heroen Verbruggen, et al.
Pages: 2551 - 2559 - Understanding genetic control of root system architecture in soybean : insights into the genetic basis of lateral root number(2019)
Authors: Silvas J Prince, Babu Valliyodan, Heng Ye, Ming Yang, Shuaishuai Tai, Wushu Hu, Mackensie Murphy, Lorellin A Durnell, Li Song, Trupti Joshi, et al.
Pages: 212 - 229 - A widespread alternative squalene epoxidase participates in eukaryote steroid biosynthesis(2019)
Authors: Jacob Pollier, Emmelien Vancaester, Unnikrishnan Kuzhiumparambil, Claudia E. Vickers, Klaas Vandepoele, Alain Goossens, Michele Fabris
Pages: 226 - 233 - A new evolutionary model for the vertebrate actin family including two novel groups(2019)
Authors: Laura Witjes, Marleen Van Troys, Joël Vandekerckhove, Klaas Vandepoele, Christophe Ampe
- Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase(2019)
Authors: Jelle Van Leene, Chao Han, Astrid Gadeyne, Dominique Eeckhout, Caroline Matthijs, Nancy De Winne, Geert Persiau, Eveline Van De Slijke, Brigitte Van De Cotte, Elisabeth Stes, et al.
Pages: 316 - 327 - Curse : building expression atlases and co-expression networks from public RNA-Seq data(2019)
Authors: Dries Vaneechoutte, Klaas Vandepoele
Pages: 2880 - 2881 - Overcoming challenges in variant calling : exploring sequence diversity in candidate genes for plant development in perennial ryegrass (Lolium perenne)(2019)
Authors: Sabine Van Glabeke, Annelies Haegeman, Hilde Muylle, Frederik RD van Parijs, Stephen L Byrne, Torben Asp, Bruno Studer, Antje Rohde, Isabel Roldán-Ruiz, Klaas Vandepoele, et al.
Pages: 1 - 12 - Enhanced maps of transcription factor binding sites improve regulatory networks learned from accessible chromatin data(2019)
Authors: Shubhada Rajabhau Kulkarni, Marc Jones, Klaas Vandepoele
Pages: 412 - 425