Researcher
Klaas Vandepoele
- Keywords (Ghent University):systems biology, Plant biotechnology, bio-informatics
- Disciplines (Flanders Institute for Biotechnology):Cell death and senescence, Invasion biology, Epigenomics, Auto-ecology, Biogeography and phylogeography
- Disciplines (Ghent University):Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Systems biology not elsewhere classified, Plant cell and molecular biology, Single-cell data analysis, Analysis of next-generation sequence data, Bioinformatics and computational biology not elsewhere classified, Bioinformatics data integration and network biology
- See also: Klaas Vandepoele (Flanders Institute for Biotechnology)
Affiliations
- Vandepoele Lab (Research group)
Responsible
From1 Jan 2018 → Today - De Veylder Lab (Research group)
Member
From1 Jan 2017 → 31 Dec 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Dec 2000 → Today
Infrastructure
1 - 1 of 1
- ELIXIR Belgium (Consortium partner)
Projects
1 - 10 of 18
- The secret garden: diatom adaptation and evolution in benthic environmentsFrom1 Jan 2023 → TodayFunding: BOF - projects
- Assessment of the roles of endogenous and environmental cues controlling cell size distribution and sexual reproduction in benthic diatom populationsFrom1 Nov 2022 → TodayFunding: FWO fellowships
- Charting the functional components of the diverse sexual life cycles in diatomsFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Identification of the gene regulatory networks controlling vascular development in plants – a comparative approach at single-cell resolutionFrom1 Oct 2021 → 14 Oct 2022Funding: FWO junior postdoctoral fellowship
- Enzyme biodiscovery pipeline optimisation via toolbox developmentFrom1 Sep 2021 → TodayFunding: VLAIO - Catalisti - cSBO
- Software development for gene-trait discovery and prioritization in agricultural biotechnology using single-cell genomicsFrom1 Jun 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Reproductive barriers, interspecific gene flow and diversification in a globally distributed pennate diatomFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- From model species to crop: enhancing the translation of functional traits in plants using an integrative network-based approach.From1 Oct 2019 → TodayFunding: BOF - projects
- ELIXIR Infrastructure for Data and Services to strengthen Life-Sciences Research in FlandersFrom1 Jan 2019 → 31 Dec 2022Funding: FWO International research infrastructure (IRI)
Publications
31 - 40 of 133
- MultiU+2010omics networkU+2010based functional annotation of unknown Arabidopsis genes(2021)
Authors: Thomas Depuydt, Klaas Vandepoele
Pages: 1193 - 1212 - Comprehensive and functional analysis of horizontal gene transfer events in diatoms(2020)
Authors: Emmelien Vancaester, Thomas Depuydt, Cristina Maria Osuna Cruz, Klaas Vandepoele
Pages: 3243 - 3257 - The medium-size noncoding RNA transcriptome of Ostreococcus tauri, the smallest living eukaryote, reveals a large family of small nucleolar RNAs displaying multiple genomic expression strategies(2020)
Authors: Laurie Bousquet, Claire Hemon, Paul Malburet, François Bucchini, Klaas Vandepoele, Nigel Grimsley, Herve Moreau, Manuel Echeverria
- Light regulation of LHCX genes in the benthic diatom Seminavis robusta(2020)
Authors: Lander Blommaert, Emmelien Vancaester, Marie Huysman, Cristina Maria Osuna Cruz, Sofie D'hondt, Johann Lavaud, Bernard Lepetit, Per Winge, Atle M. Bones, Klaas Vandepoele, et al.
- Comparative transcriptomics enables the identification of functional orthologous genes involved in early leaf growth(2020)
Authors: Jasmien Vercruysse, Michiel Van Bel, Cristina Maria Osuna Cruz, Shubhada Rajabhau Kulkarni, Véronique Van den Storme, Hilde Nelissen, Nathalie Gonzalez Sanchez, Dirk Inzé, Klaas Vandepoele
Pages: 553 - 567 - Identification and evolution of gene regulatory networks : insights from comparative studies in plants(2020)
Authors: Marc Jones, Klaas Vandepoele
Pages: 42 - 48 - Evolution of vascular plants through redeployment of ancient developmental regulators(2020)
Authors: Kuan-Ju Lu, Nicole van U+2019t Wout Hofland, Eliana Mor, Sumanth Mutte, Paul Abrahams, Hirotaka Kato, Klaas Vandepoele, Dolf Weijers, Bert De Rybel
Pages: 733 - 740 - The Seminavis robusta genome provides insights into the evolutionary adaptations of benthic diatoms (vol 11, 3320, 2020)(2020)
Authors: Cristina Maria Osuna Cruz, Gust Bilcke, Emmelien Vancaester, Sam De Decker, Atle M. Bones, Per Winge, Nicole Poulsen, Petra Bulánková, Bram Verhelst, Sien Audoor, et al.
- Inference of plant gene regulatory networks using data-driven methods : a practical overview(2020)
Authors: Shubhada Rajabhau Kulkarni, Klaas Vandepoele
- Distinctive growth and transcriptional changes of the diatom Seminavis robusta in response to quorum sensing related compounds(2020)
Authors: Frederike Stock genannt Schroer, Gust Bilcke, Sam De Decker, Cristina Maria Osuna Cruz, Koen Van den Berge, Emmelien Vancaester, Lieven De Veylder, Klaas Vandepoele, Wim Vyverman