Researcher
Klaas Vandepoele
- Keywords (Ghent University):systems biology, Plant biotechnology, bio-informatics
- Disciplines (Flanders Institute for Biotechnology):Cell death and senescence, Invasion biology, Epigenomics, Auto-ecology, Biogeography and phylogeography
- Disciplines (Ghent University):Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Systems biology not elsewhere classified, Plant cell and molecular biology, Single-cell data analysis, Analysis of next-generation sequence data, Bioinformatics and computational biology not elsewhere classified, Bioinformatics data integration and network biology
- See also: Klaas Vandepoele (Flanders Institute for Biotechnology)
Affiliations
- Vandepoele Lab (Research group)
Responsible
From1 Jan 2018 → Today - De Veylder Lab (Research group)
Member
From1 Jan 2017 → 31 Dec 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Dec 2000 → Today
Infrastructure
1 - 1 of 1
- ELIXIR Belgium (Consortium partner)
Projects
1 - 10 of 18
- The secret garden: diatom adaptation and evolution in benthic environmentsFrom1 Jan 2023 → TodayFunding: BOF - projects
- Assessment of the roles of endogenous and environmental cues controlling cell size distribution and sexual reproduction in benthic diatom populationsFrom1 Nov 2022 → TodayFunding: FWO fellowships
- Charting the functional components of the diverse sexual life cycles in diatomsFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Identification of the gene regulatory networks controlling vascular development in plants – a comparative approach at single-cell resolutionFrom1 Oct 2021 → 14 Oct 2022Funding: FWO junior postdoctoral fellowship
- Enzyme biodiscovery pipeline optimisation via toolbox developmentFrom1 Sep 2021 → TodayFunding: VLAIO - Catalisti - cSBO
- Software development for gene-trait discovery and prioritization in agricultural biotechnology using single-cell genomicsFrom1 Jun 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Reproductive barriers, interspecific gene flow and diversification in a globally distributed pennate diatomFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- From model species to crop: enhancing the translation of functional traits in plants using an integrative network-based approach.From1 Oct 2019 → TodayFunding: BOF - projects
- ELIXIR Infrastructure for Data and Services to strengthen Life-Sciences Research in FlandersFrom1 Jan 2019 → 31 Dec 2022Funding: FWO International research infrastructure (IRI)
Publications
1 - 10 of 133
- Diatom adhesive trail proteins acquired by horizontal gene transfer from bacteria serve as primers for marine biofilm formation(2023)
Authors: Jirina Zackova Suchanova, Gust Bilcke, Beata Romanowska, Ali Fatlawi, Martin Pippel, Alastair Skeffington, Michael Schroeder, Wim Vyverman, Klaas Vandepoele, Nils Kröger, et al.
Pages: 770 - 783 - Plant gene regulatory networks : methods and protocols(2023)
Authors: Kerstin Kaufmann, Klaas Vandepoele
- Predicting transcriptional responses to heat and drought stress from genomic features using a machine learning approach in rice(2023)
Authors: Helder Opdebeeck, Klaas Vandepoele
- A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis(2023)
Authors: Trang Hieu Nguyen, Louis Thiers, Alex Van Moerkercke, Yuechen Bai, Patricia Fernandez Calvo, Max Minne, Thomas Depuydt, Maite Colinas Martinez, Kevin Verstaen, Gert Van Isterdael, et al.
Pages: 926 - 937 - Plant lineage-specific PIKMIN1 drives APC/CCCS52A2 E3-ligase activity-dependent cell division(2023)
Authors: Alex Willems, Yuanke Liang, Jefri Heyman, Thomas Depuydt, Thomas Eekhout, Balkan Canher, Hilde Van Den Daele, Ilse Vercauteren, Klaas Vandepoele, Lieven De Veylder
Pages: 1574 - 1595 - Distinctive and complementary roles of E2F transcription factors during plant replication stress responses(2023)
Authors: Maherun Nisa, Thomas Eekhout, Clara Bergis, José Antonio Pedroza-Garcia, Xiaoning He, Christelle Mazubert, Ilse Vercauteren, Toon Cools, Rim Brik-Chaouche, Jeannine Drouin-Wahbi, et al.
Pages: 1269 - 1282 - Characterization of gene regulatory networks in plants using new methods and data types(2023)Edition: 2Series: Methods in Molecular Biology
Authors: Klaas Vandepoele, Kerstin Kaufmann
Pages: 1 - 11 - Dicer-like 3a mediates intergenerational resistance against root-knot nematodes in rice via hormone responses(2023)
Authors: Aniko Meijer, Mohammad Reza Atighi Quchan Atigh, Kristof Demeestere, Tim De Meyer, Klaas Vandepoele, Tina Kyndt
Pages: 2071 - 2085 - Identification of growth regulators using cross-species network analysis in plants(2022)
Authors: Pasquale Luca Curci, Jie Zhang, Niklas Mähler, Carolin Seyfferth, Chanaka Mannapperuma, Tim Diels, Tom Van Hautegem, David Jonsen, Nathaniel Street, Torgeir R Hvidsten, et al.
Pages: 2350 - 2365 - JASPAR 2022 : the 9th release of the open-access database of transcription factor binding profiles(2022)
Authors: Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, et al.
Pages: D165 - D173