Researcher
Jo Vandesompele
- Keywords:non-coding RNA, RNA, Applied bioinformatics, DNA, cancer, liquid biopsy, DNA and RNA sequencing, PCR
- Disciplines:Cancer diagnosis, Cancer prevention, Cancer epidemiology, Cancer biology, Cancer therapy, Analysis of next-generation sequence data, Bioinformatics of disease, Bioinformatics data integration and network biology, Data visualisation and high-throughput image analysis, Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Clinical genetics and molecular diagnostics, Oncology not elsewhere classified, Medical epigenomics, Medical metagenomics, Medical genomics, Single-cell data analysis, Bioinformatics and computational biology not elsewhere classified, Structural bioinformatics and computational proteomics
Affiliations
- Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → Today - Department of Pediatrics and medical genetics (Department)
Member
From1 Oct 1997 → 30 Sep 2018
Projects
1 - 10 of 32
- Development of methods for the quantification of nucleic acids in functional genomics in cancerFrom16 Sep 2023 → 15 Jan 2024Funding: BOF - doctoral mandates
- International thematic network - PrIOMICFrom1 Jan 2023 → TodayFunding: BOF - mobility
- 6-color digital PCR instrumentFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Every cell counts! Transforming exercise science through single fiber transcriptome analysis in human skeletal muscleFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- Cell-free nucleic acid profiling in diffuse large B-cell lymphoma: a molecular guidance to precision medicineFrom1 Oct 2022 → 31 Oct 2022Funding: BOF - doctoral mandates
- Replication fork protector dependency factors: novel targets for combination treatment and immunomodulation in neuroblastoma (REINFORCE)From1 Jan 2022 → TodayFunding: BOF - projects
- Development of a laboratory toolbox to study human circular RNAsFrom1 Oct 2021 → TodayFunding: BOF - projects
- The biology of tumor-derived extracellular RNA in liquid biopsiesFrom1 Nov 2020 → TodayFunding: FWO junior postdoctoral fellowship
- Cancer-specific circulating RNAs as biomarkers for diagnosis and therapy response monitoringFrom1 Nov 2020 → TodayFunding: FWO fellowships
- Analyzing circulating bacterial extracellular vesicles in cancer patients to identify their composition and biomarker potential.From1 Nov 2020 → 31 Mar 2023Funding: FWO fellowships
Publications
21 - 30 of 122
- Validation of circular RNAs using RT‐qPCR after effective removal of linear RNAs by ribonuclease R(2021)
Authors: Marieke Vromman, Nurten Yigit, Kimberly Verniers, Steve Lefever, Jo Vandesompele, Pieter-Jan Volders
- Recurrent chromosomal imbalances provide selective advantage to human embryonic stem cells under enhanced replicative stress conditions(2021)
Authors: Liselot Mus, Stéphane Van Haver, Mina Popovic, Wim Trypsteen, Steve Lefever, Nadja Zeltner, Yudelca Ogando, Eva Jacobs, Geertrui Denecker, Ellen Sanders, et al.
Pages: 272 - 281 - Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA(2021)
Authors: Vanessa Vermeirssen, Jill Deleu, Annelien Morlion, Celine Everaert, Kimberly Verniers, Tom Van Maerken, Bram De Wilde, Jo Vandesompele, Anneleen Decock
Number of pages: 1 - Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control (exRNAQC) study(2021)
Authors: Anneleen Decock, Olivier De Wever, Celine Everaert, Hetty Helsmoortel, An Hendrix, Pieter Mestdagh, Annelien Morlion, Jo Vandesompele, Ruben Van Paemel, Francisco Avila Cobos, et al.
Number of pages: 1 - Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls(2021)
Authors: Eva Hulstaert, Anneleen Decock, Annelien Morlion, Celine Everaert, Kimberly Verniers, Justine Nuytens, Nele Nijs, Gary P. Schroth, Scott Kuersten, Stephen M. Gross, et al.
- The RNA Atlas expands the catalog of human non-coding RNAs(2021)
Authors: Lucia Lorenzi, Hua-Sheng Chiu, Francisco Avila Cobos, Stephen Gross, Pieter-Jan Volders, Robrecht Cannoodt, Justine Nuytens, Katrien Vanderheyden, Jasper Anckaert, Steve Lefever, et al.
Pages: 1453 - 1465 - Substantial performance differences among RNA purification kits and blood collection tubes in the Extracellular RNA Quality Control study-important considerations for liquid biopsies(2020)Volume: 26
Authors: Anneleen Decock, Jasper Anckaert, Celine Everaert, Justine Nuytens, Scott Kuersten, An Hendrix, Jo Vandesompele, Pieter Mestdagh, Bert Dhondt, Ruben Van Paemel, et al.
Pages: 93 - 94 - The digital MIQE guidelines update : minimum information for publication of quantitative digital PCR experiments for 2020(2020)
Authors: Jim F. Huggett, Alexandra S. Whale, Ward De Spiegelaere, Afif Abdel Nour, Young-Kyung Bae, Vladimir Benes, Daniel Burke, Megan Cleveland, Philippe Corbisier, Alison S. Devonshire, et al.
Pages: 1012 - 1029 - Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles(2020)Volume: 26
Authors: Celine Everaert, Hetty Helsmoortel, Anneleen Decock, Eva Hulstaert, Ruben Van Paemel, Kimberly Verniers, Justine Nuytens, Jasper Anckaert, Nele Nijs, Joeri Tulkens, et al.
Pages: 94 - 95 - Whole transcriptome profiling of liquid biopsies from tumor xenografted mouse models enables specific monitoring of tumor-derived RNA(2020)
Authors: Jill Deleu, Vanessa Vermeirssen, Celine Everaert, Annelien Morlion, Kimberly Verniers, Jasper Anckaert, Jo Vandesompele, Tom Van Maerken, Anneleen Decock, Bram De Wilde
Number of pages: 1
Patents
1 - 6 of 6
- Inhibition of a lncRNA for treatment of melanoma (Inventor)
- Biomarkers for disease burden of neuroblastoma (Inventor)
- Usages of recombinant extracellular vesicles (Inventor)
- Biomarkers for disease burden of neuroblastoma (Inventor)
- Usages of recombinant extracellular vesicles (Inventor)
- Inhibition of a lncRNA for treatment of melanoma (Inventor)
Linked dataset
1 - 1 of 1