Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
1 - 10 of 26
- Unraveling the role of the immune system in the development of exuberant granulation tissue in horse woundsFrom1 Jan 2024 → TodayFunding: BOF - doctoral mandates
- Extracellular vesicles from follicular fluid are key for successful development of fresh and vitrified equine oocytesFrom16 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- qPCR system for NGS library quality control, gene expression measurement, hybridization curve, and melting curve analysisFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Cofunding core facility - Ghent Light Microscopy (GLiM)From1 Jul 2022 → TodayFunding: BOF - research organisations
- Cofunding core facility - UGent NGS CoreFrom1 Jul 2022 → TodayFunding: BOF - research organisations
- Modular high-end mass spectrometer for ultrasensitive quantification and imaging of small organic molecules in cross-health research - MSsmall-XHFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Empirical exploration of novel DNA probes for hybridization to tandem repeatsFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Nanopore sequencing of complete pharmacogenes after CRISPR/Cas9 enrichment in tamoxifen and clopidogrel patients allowing enhanced haplotyping and continuous scale machine learning efficacy prediction.From1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- PEA histone modification proteomicsFrom1 Mar 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciencesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
Publications
221 - 230 of 274
- Quantitative proteomics to characterize specific histone H2A proteolysis in chronic lymphocytic leukemia and the myeloid THP-1 cell line(2014)
Authors: Pieter Glibert, Liesbeth Vossaert, Katleen Van Steendam, Filip Van Nieuwerburgh, Thomas Kipps, Maarten Dhaenens, Dieter Deforce
Pages: 9407 - 9421 - Presence and analysis of plasmids in human and animal associated Arcobacter species(2014)
Authors: Laid Douidah, Filip Van Nieuwerburgh, Dieter Deforce, Hanne Ingmer, Olivier Vandenberg, Anne-Marie Van Den Abeele
- Development and performance of a targeted whole exome sequencing enrichment kit for the dog (Canis Familiaris Build 3.1)(2014)
Authors: Bart Broeckx, Frank Coopman, Geert Verhoeven, Valérie Bavegems, Sarah De Keulenaer, Ellen De Meester, Filip Van Nieuwerburgh, Dieter Deforce
- Detailed method description for noninvasive monitoring of differentiation status of human embryonic stem cells(2014)
Authors: Ellen Scheerlinck, Katleen Van Steendam, Mado Vandewoestyne, Trees Lepez, Veerle Gobin, Paulien Meert, Liesbeth Vossaert, Filip Van Nieuwerburgh, Ann Van Soom, Luc Peelman, et al.
Pages: 60 - 66 - Genome-wide association study of obsessive-compulsive disorder(2013)
Authors: SE Stewart, D Yu, JM Scharf, BM Neale, JA Fagerness, CA Mathews, PD Arnold, PD Evans, ER Gamazon, L Osiecki, et al.
Pages: 788 - 798 - Ancient dispersal of the human fungal pathogen Cryptococcus gattii from the Amazon rainforest(2013)
Authors: Ferry Hagen, Paulo C Ceresini, Itzhack Polacheck, Hansong Ma, Filip Van Nieuwerburgh, Toni Gabaldón, Sarah Kagan, E Rhiannon Pursall, Hans L Hoogveld, Leo JJ van Iersel, et al.
- Presence and potential of cell free DNA in different types of forensic samples(2013)
Authors: Mado Vandewoestyne, David Van Hoofstat, Aimee Franssen, Filip Van Nieuwerburgh, Dieter Deforce
Pages: 316 - 320 - Prevalence of genetic disorders in dogs from Belgium, the Netherlands and Germany(2013)
Authors: Bart Broeckx, Frank Coopman, Geert Verhoeven, Wim Van Haeringen, Tim Bosmans, Ingrid Gielen, Henri van Bree, Filip Van Nieuwerburgh, Bernadette Van Ryssen, Katleen Van Steendam, et al.
Number of pages: 1 - Caspase-14-deficient mice are more prone to the development of parakeratosis(2013)
Authors: Esther Hoste, Geertrui Denecker, Barbara Gilbert, Filip Van Nieuwerburgh, Leslie van der Fits, Bob Asselbergh, Jean-Pierre Hachem, Dieter Deforce, Errol P Prens, Peter Vandenabeele
Pages: 742 - 750 - PiTRAQ, a strategy to simultaneously correlate protein expression and phosphorylation stoichiometry between different samples: evaluation on different mass spectrometers(2013)
Authors: Pieter Glibert, Maarten Dhaenens, Paulien Meert, Niklaas Colaert, Filip Van Nieuwerburgh, Lennart Martens, Dieter Deforce
Pages: 163 - 163
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)