Researcher
Kathleen Marchal
- Keywords:bioinformatics, Data Mining
- Disciplines:Other biological sciences not elsewhere classified, Development of bioinformatics software, tools and databases, Other natural sciences not elsewhere classified, Analysis of next-generation sequence data, Bioinformatics of disease, General biology not elsewhere classified, Biology and other natural sciences, Bioinformatics data integration and network biology, Bio-informatics, Medical genomics
Affiliations
- Department of Information technology (Department)
Member
From1 Mar 2018 → Today - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Sep 2011 → Today
Projects
1 - 9 of 9 results
- A data-driven integrative framework for the identification of cancer driver pathways and their mode of action.From1 Nov 2019 → TodayFunding: FWO Strategic Basic Research Grant
- Forwarding precision oncology by integrating cohort-derived molecular and clinical information.From1 Oct 2019 → TodayFunding: BOF - Doctoral projects
- Leveraging comprehensive cancer systems genetic data to uncover the modus operandi of driver mutationsFrom1 Oct 2018 → TodayFunding: FWO fellowships
- The importance of epistasis and network rewiring in determining the adaptive outcome of bacterial populations subjected to antibiotic gradientsFrom1 Jan 2018 → TodayFunding: FWO research project
- More rapid and accurate identification of (zoonotic) Salmonella serotypes subjected to official control in poultry and porkFrom1 Feb 2015 → 31 Aug 2018Funding: Ministery of Social Affairs, Public Health and Environment
- Genetic adaption of bacterial catabolic pathways for pesticide biodegradation: role of historical contingencyFrom1 Jan 2015 → 31 Dec 2020Funding: FWO research project
- Network-based approaches for the identification and mode of action determination of anti-bacterial agentsFrom1 Jan 2013 → 31 Dec 2016Funding: SBO (Strategic basic research)
- Network-guided analysis of genotype and expression phenotype dataFrom1 Jan 2013 → 31 Dec 2018Funding: FWO research project
- Bioinformatics: from nucleotids to networks (N2N)From1 May 2010 → 30 Apr 2017Funding: BOF - Other initiatives
Publications
1 - 10 of 138 results
- A practical method to implement strain-level metagenomics-based foodborne outbreak investigation and source tracking in routine(2020)
Authors: Florence Buytaers, Assia Saltykova, Sarah Denayer, Bavo Verhaegen, Kevin Vanneste, Nancy H. C. Roosens, Denis Piérard, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Number of pages: 1 - Development of an NGS-based workflow for improved monitoring of circulating plasmids in support of risk assessment of antimicrobial resistance gene dissemination(2020)
Authors: Bas Berbers, Pieter-Jan Ceyssens, Pierre Bogaerts, Kevin Vanneste, Nancy Roosens, Kathleen Marchal, Sigrid C.J. De Keersmaecker
Number of pages: 1 - Strain-level metagenomic data analysis of enriched in vitro and in silico spiked food samples : paving the way towards a culture-free foodborne outbreak investigation using STEC as a case study(2020)
Authors: Assia Saltykova, Florence Buytaers, Sarah Denayer, Bavo Verhaegen, Denis Piérard, Nancy H. C. Roosens, Kathleen Marchal, Sigrid C. J. De Keersmaecker
Number of pages: 1 - The benefits of whole genome sequencing for foodborne outbreak investigation from the perspective of a national reference laboratory in a smaller country(2020)
Authors: Stéphanie Nouws, Bert Bogaerts, Bavo Verhaegen, Sarah Denayer, Florence Crombé, Klara De Rauw, Denis Piérard, Kathleen Marchal, Kevin Vanneste, Nancy H. C. Roosens, et al.
Number of pages: 1 - Culture-independent analysis of linuron-mineralizing microbiota and functions in on-farm biopurification systems via DNA-stable isotope probing : comparison with enrichment culture(2020)
Authors: Harry Lerner, Basak Öztürk, Anja B. Dohrmann, Joice Thomas, Kathleen Marchal, René De Mot, Wim Dehaen, Christoph C. Tebbe, Dirk Springael
Pages: 9387 - 9397 - Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis(2020)
Authors: David Mas-Ponte, Rory Johnson, Federico Abascal, Samirkumar B. Amin, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Johanna Bertl, Keith A. Boroevich, Soren Brunak, et al.
Number of pages: 1 - Distinct expression and methylation patterns for genes with different fates following a single whole-genome duplication in flowering plants(2020)
Authors: Tao Shi, Razgar Seyed Rahmani, Paul F. Gugger, Muhua Wang, Hui Li, Yue Zhang, Zhizhong Li, Qingfeng Wang, Yves Van de Peer, Kathleen Marchal, et al.
Pages: 2394 - 2413 - Analyses of non-coding somatic drivers in 2,658 cancer whole genomes(2020)
Authors: Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M Hess, Randi Istrup Juul, Ziao Lin, et al.
Pages: 102 - 111 - Integrative pathway enrichment analysis of multivariate omics data(2020)
Authors: Marta Paczkowska, Jonathan Barenboim, Nardnisa Sintupisut, Natalie S Fox, Helen Zhu, Diala Abd-Rabbo, Miles W Mee, Paul C Boutros, Jüri Reimand, the PCAWG Drivers and Functional Interpretation Working Group, et al.
Number of pages: 1 - Pathway and network analysis of more than 2500 whole cancer genomes(2020)
Authors: Matthew A Reyna, David Haan, Marta Paczkowska, Lieven Verbeke, Miguel Vazquez, Abdullah Kahraman, Sergio Pulido-Tamayo, Jonathan Barenboim, Lina Wadi, Priyanka Dhingra, et al.
Number of pages: 1