Researcher
Annelies Haegeman
- Disciplines:Analysis of next-generation sequence data
Affiliations
- Plant Sciences (Research unit)
Responsible
From1 Jan 2019 → Today - Growth and Development (Division)
Responsible
From1 May 2013 → 31 Dec 2018
Projects
1 - 10 of 12
- Linking soil biodiversity and ecosystem functions and services in different land uses: from the identification of drivers, pressures and climate change resilience to their economic valuationFrom1 Sep 2023 → Today
- Exploring practical applications of metabarcoding with MinION to support the surveillance of plant pathogensFrom1 Sep 2022 → Today
- Assessing the risk of whitefly transmitted viruses for Belgian cropsFrom1 Jun 2022 → 30 Nov 2024
- Inzicht in het persisterend karakter van Samonella Infantis in de braadkippensector in België als basis voor het doorbreken van contaminatiecycliFrom1 Feb 2022 → Today
- Phytosanitary status and epidemiology of beech leaf disease in BelgiumFrom1 Jun 2021 → 31 May 2023
- Integrated management of the onion thrips, Thrips tabaci in open field vegetablesFrom1 Oct 2020 → 30 Sep 2024
- Plant Health Bioinformatics NetworkFrom1 Sep 2019 → 28 Feb 2022
- Reduction of Campylobacter in broiler flocks: identification of risk factors, evaluation of increased biosecurity measures and the protective effect of the microbiota of Campylobacter free flocksFrom15 Jan 2018 → 31 Jan 2022
- Detection, identification and entry routes of Verticillium on hopFrom1 Jan 2018 → 31 Dec 2019
- Unravelling the Little Cherry disease complex at European scale to improve transnational diagnostics and management of the diseaseFrom1 May 2017 → 30 Apr 2019
Publications
1 - 10 of 101
- Towards Improved Nepovirus Detection and Identification in Xiphinema Nematodes(2024)
Authors: Ellen Everaert, Kris De Jonghe, Nicole Viaene, Annelies Haegeman, Paul Quataert
- Phenological mismatches mitigate the ecological impact of a biological invader on amphibian communities(2024)
Authors: Teun Everts, Charlotte Van Driessche, Sabrina Neyrinck, Annelies Haegeman, Tom Ruttink, Hans Jacquemyn, Rein Brys
- The use of high-throughput sequencing in plant health research and diagnostics(2024)
Authors: Annelies Haegeman
Pages: 11-20 - Nematodes alter the taxonomic and functional profiles of benthic bacterial communities(2024)
Authors: Rodgee Mae Guden, Annelies Haegeman, Tom Ruttink, Tom Moens, Sofie Derycke
- Correction: Haegeman et al. Looking beyond Virus Detection in RNA Sequencing Data: Lessons Learned from a Community-Based Effort to Detect Cellular Plant Pathogens and Pests. Plants 2023, 12, 2139(2024)
Authors: Annelies Haegeman, Yoika Foucart, Kris De Jonghe, Thomas Goedefroit, Maher Al Rwahnih, Neil Boonham, Thierry Candresse, Yahya Z A Gaafar, Oscar P Hurtado-Gonzales, Zala Kogej Zwitter, et al.
- Linnemannia elongata: a key species in chitin-based plant growth promotion(2024)
Authors: Caroline De Tender, Michiel Vandecasteele, Sarah Ommeslag, N De Zutter, Ellen Vandenbussche, Annelies Haegeman, Kris Audenaert, Leilei Li, Bart Vandecasteele, Floris Voorthuijzen, et al.
Pages: 366-377 - The use of HTS in plant health research and diagnostics(2024)
Authors: Annelies Haegeman
Pages: 11-20 - The effect of maternal supply of rumen-protected protein to Holstein Friesian cows during the dry period on the transfer of passive immunity and colostral microbial composition(2023)
Authors: Ilke Van Hese, Karen Goossens, Leen Vandaele, Bart Ampe, Annelies Haegeman, G. Opsomer
Pages: 8723-8745 - Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies(2023)
Authors: Johan Rollin, Rachelle Bester, Yves Brosteaux, Kadriye Caglayan, Kris De Jonghe, A. Eichmeier, Yoika Foucart, Annelies Haegeman, Igor Koloniuk, Petr Kominek, et al.
Pages: 1-25 - Using environmental DNA metabarcoding to monitor fish communities in small rivers and large brooks: Insights on the spatial scale of information(2023)
Authors: Charlotte Van Driessche, Teun Everts, Sabrina Neyrinck, David Halfmaerten, Annelies Haegeman, Tom Ruttink, Dries Bonte, Rein Brys
Linked dataset
1 - 9 of 9
- 12S metabarcoding reference data from the Research Institute for Nature and Forest (INBO) (Creator)
- Data from: Using environmental DNA metabarcoding to monitor fish communities in small rivers and large brooks: Insights on the spatial scale of information (Creator)
- Training materials on detection of plant viruses through high throughput sequencing - Accompanying information Kutnjak et al., Microorganisms, 2021,9, 841. (Creator)
- Supplementary information accompanying the paper "Nematodes facilitate bacterial-mediated biogeochemical processes in marine sediments: a meta-transcriptomics approach" (Creator)
- Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection (Creator)
- Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection (Creator)
- 12S metabarcoding reference data from the Research Institute for Nature and Forest (INBO) (Creator)
- Data from: Unravelling hybridization in Phytophthora using phylogenomics and genome size estimation (Creator)
- GBS_Phytophthora_Release1.0.0 (Creator)