Differential abundance and gene set enrichment in plasma of cancer patients versus controls Ghent University
DESeq2 differential abundance output for genes with q < 0.05 and |log2 fold change| > 1 in cancer vs control plasma samples: - differentialabundance_pancancer.txt: tables with differentially abundant genes (|log2(fold change)|>1 and adjusted p>0.05) per cancer-control comparison (cancertype) in a pan-cancer plasma sample cohort (25 locally advanced to metastatic cancer types - 7 or 8 patients per type - vs 8 cancer-free control donors) - differentialabundance_threecancer.txt: tables with differentially abundant genes (|log2(fold change)|>1 and adjusted p>0.05) per ...