Researcher
Guy Baele
- Keywords:Medicine
- Disciplines:Microbiology, Systems biology, Laboratory medicine
Affiliations
- Laboratory of Clinical and Epidemiological Virology (Rega Institute) (Division)
Member
From1 Feb 2011 → Today
Projects
1 - 9 of 9 results
- Inter- and intra-community dynamics of SARS-CoV-2 spread by whole-genome sequencing and phylodynamic analysisFrom1 Nov 2020 → TodayFunding: FWO Special Call for Covid-19 research projects
- Methods and Applications for Bayesian Phylodynamic InferenceFrom1 Aug 2020 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Phylodynamics for time-sensitive viral dataFrom24 Feb 2020 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Statistical and computational approaches to enable real-time phylodynamic inferenceFrom1 Jan 2020 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Statistical and computational approaches to enable real-time phylodynamic inferenceFrom1 Oct 2018 → TodayFunding: BOF - Concerted Research Project from 1994
- Structured coalescent models for accurate Bayesian phylodynamic inferenceFrom1 Oct 2018 → TodayFunding: FWO Strategic Basic Research Grant
- Real-time pathogen phylodynamicsFrom1 Oct 2017 → 30 Sep 2019Funding: BOF - Other initiatives
- Bayesian phylogenetic model development for viral evolutionary reconstructionFrom19 Sep 2017 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Exploiting fine-scale parallellism on high performance computing architecture for phylogenetic inference and model testingFrom1 Jan 2014 → 31 Dec 2014Funding: FWO research grant KAN
Publications
1 - 10 of 71 results
- Markov-Modulated Continuous-Time Markov Chains to Identify Site- and Branch-Specific Evolutionary Variation in BEAST.(2021)
Authors: Guy Baele, Mandev S Gill, Paul Bastide, Philippe Lemey, Marc A Suchard
Pages: 181 - 189 - Human Diversity of Killer Cell Immunoglobulin-Like Receptors and Human Leukocyte Antigen Class I Alleles and Ebola Virus Disease Outcomes.(2021)
Authors: Tony Wawina, Bert Vanmechelen, Valentine Lhermitte, Joan Martí-Carreras, Valentijn Vergote, Fara Raymond Koundouno, Joseph Akoi-Boré, Ruth Thom, Tom Tipton, Kimberley Steeds, et al.
Pages: 76 - 84 - Bayesian Evaluation of Temporal Signal in Measurably Evolving Populations.(2020)
Authors: Sebastian Duchene, Philippe Lemey, Tanja Stadler, Simon YW Ho, David A Duchene, Vijaykrishna Dhanasekaran, Guy Baele
Pages: 3363 - 3379 - Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2(2020)
Authors: Philippe Lemey, Samuel Hong, Verity Hill, Guy Baele, Chiara Poletto, Vittoria Colizza, Aine O'Toole, John T McCrone, Kristian G Andersen, Michael Worobey, et al.
Number of pages: 14 - Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics(2020)
Authors: Xiang Ji, Zhenyu Zhang, Andrew Holbrook, Akihiko Nishimura, Guy Baele, Andrew Rambaut, Philippe Lemey, Marc A Suchard
Pages: 3047 - 3060Number of pages: 14 - Radiation of the coralline red algae (Corallinophycidae, Rhodophyta) crown group as inferred from a multilocus time-calibrated phylogeny(2020)
Authors: Viviana Pena, Christophe Vieira, Juan Carlos Braga, Julio Aguirre, Anja Roesler, Guy Baele, Olivier De Clerck, Line Le Gall
Number of pages: 19 - Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus(2020)
Authors: Wan-Ting He, Xiang Ji, Wei He, Simon Dellicour, Shilei Wang, Gairu Li, Letian Zhang, Marius Gilbert, Henan Zhu, Gang Xing, et al.
Pages: 2641 - 2654Number of pages: 14 - Temporal signal and the phylodynamic threshold of SARS-CoV-2.(2020)
Authors: Sebastian Duchene, Leo Featherstone, Melina Haritopoulou-Sinanidou, Andrew Rambaut, Philippe Lemey, Guy Baele
Pages: veaa061 - nosoi: A stochastic agent-based transmission chain simulation framework inr(2020)
Authors: Sebastian Lequime, Paul Bastide, Simon Dellicour, Philippe Lemey, Guy Baele
Pages: 1002 - 1007Number of pages: 6 - Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable(2020)
Authors: Carla Mavian, Sergei Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne-Mieke Vandamme, Simon Dellicour, Samuel V Scarpino, Charlotte Houldcroft, Julian Villabona-Arenas, Taylor K Paisie, et al.
Pages: 12522 - 12523Number of pages: 2