Publicaties
Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case Instituut voor Tropische Geneeskunde
Background: For most organisms, even if their genome sequence is available, little functional information about individual genes or proteins exists. Several annotation pipelines have been developed for functional analysis based on sequence, 'omics', and literature data. However, researchers encounter little guidance on how well they perform. Here, we used the recently sequenced potato genome as a case study. The potato genome was selected ...
Lost and found : re-searching and re-scoring proteomics data aids genome annotation and improves proteome coverage Universiteit Gent
Chromosome-scale assembly and annotation of the perennial ryegrass genome Instituut voor Landbouw-, Visserij- en Voedingsonderzoek Vlaams Instituut voor Biotechnologie Universiteit Gent
BACKGROUND: The availability of chromosome-scale genome assemblies is fundamentally important to advance genetics and breeding in crops, as well as for evolutionary and comparative genomics. The improvement of long-read sequencing technologies and the advent of optical mapping and chromosome conformation capture technologies in the last few years, significantly promoted the development of chromosome-scale genome assemblies of model plants and ...