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Experiences with Parallelizing a Bio-informatics Program on the Cell BE Universiteit Gent
The Cell Broadband Engine Architecture is a new heterogeneous multi-core architecture targeted at compute-intensive workloads. The architecture of the Cell BE has several features that are unique in high-performance general-purpose processors, such as static instruction scheduling, extensive support for vectorization, scratch pad memories, explicit programming of DMAs, mailbox communication, multiple processor cores, etc. It is necessary to make ...
The European Bioinformatics Community for Mass Spectrometry (EuBIC-MS): an open community for bioinformatics training and research. Vlaams Instituut voor Biotechnologie Universiteit Antwerpen
Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting KU Leuven
The Second Annual Meeting of the European Virus Bioinformatics Center (EVBC), held in Utrecht, Netherlands, focused on computational approaches in virology, with topics including (but not limited to) virus discovery, diagnostics, (meta-)genomics, modeling, epidemiology, molecular structure, evolution, and viral ecology. The goals of the Second Annual Meeting were threefold: (i) to bring together virologists and bioinformaticians from across the ...
Machine learning to the rescue : enabling novel proteomics workflows with data-driven bioinformatics methods Universiteit Gent
Proteins are the molecular work horse of the cell and carry out many functional and structural tasks. In depth knowledge of the complement of all proteins in a cell or tissue, called the proteome, can provide valuable insights into cellular biology in health and disease. To study the proteome in high throughput, liquid-chromatography U+2013 tandem mass spectrometry (LC-MS/MS) is most-often the platform of choice. The result of an LC-MS/MS ...
Capacity building for whole genome sequencing of Mycobacterium tuberculosis and bioinformatics in high TB burden countries Universiteit Antwerpen
Background: Whole genome sequencing (WGS) is increasingly used for Mycobacterium tuberculosis (Mtb) research. Countries with the highest tuberculosis (TB) burden face important challenges to integrate WGS into surveillance and research. Methods: We assessed the global status of Mtb WGS and developed a 3-week training course coupled with long-term mentoring and WGS infrastructure building. Training focused on genome sequencing, bioinformatics and ...