Onderzoeker
Tim Heupink
- Trefwoorden:Geneeskunde
- Disciplines:Analyse van next-generation sequence data, Computationele evolutionaire biologie, comparatieve genomics en populatiegenomics
Affiliaties
- Instituut voor Globale Gezondheid (GHI) (Onderzoeksgroep)
Lid
Vanaf1 jan 2019 → Heden - Epidemiologie en sociale geneeskunde (ESOC) (Onderzoeksgroep)
Lid
Vanaf1 okt 2016 → 31 dec 2018
Projecten
1 - 2 of 2
- Mycobacterium tuberculosis transmissiedynamiek bij de universiteitsstudenten in Ethiopië: een onderzoek d.m.v. compleet genoom sequencen.Vanaf1 jan 2019 → 28 jan 2022Financiering: VLIR-UOS Global Minds
- Long-term genetic dynamics of M. tuberculosis in a high prevalence regionVanaf1 mei 2018 → 30 apr 2019Financiering: BOF - Andere acties
Publicaties
1 - 10 van 16
- The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples(2023)
Auteurs: Tim Heupink, Lennert Verboven, Abhinav Sharma, Miguel de Diego Fuertes, Robin M. Warren, Annelies Van Rie
Pagina's: 1 - 24 - Optimizing liquefaction and decontamination of sputum for DNA extraction from Mycobacterium tuberculosis(2022)
Auteurs: Anzaan Dippenaar, Nabila Ismail, Melanie Grobbelaar, Selien Oostvogels, Margaretha de Vos, Elizabeth M. Streicher, Tim Heupink, Annelies Van Rie, Robin M. Warren
- Sequencing Mycobacteria and Algorithm-determined Resistant Tuberculosis Treatment (SMARTT)(2022)
Auteurs: Annelies Van Rie, Elise De Vos, Emilyn Costa, Lennert Verboven, Felex Ndebele, Tim Heupink, Steven Abrams, Noriah Maraba, Heeran Makkan, Trevor Beattie, et al.
Pagina's: 1 - 15 - Transmission, distribution and drug resistance-conferring mutations of extensively drug-resistant tuberculosis in the Western Cape Province, South Africa(2022)
Auteurs: Selien Oostvogels, Serej D. Ley, Tim Heupink, Anzaan Dippenaar, Elizabeth M. Streicher, Elise De Vos, Conor J. Meehan, Keertan Dheda, Rob Warren, Annelies Van Rie
Pagina's: 1 - 13 - TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis(2022)
Auteurs: Lennert Verboven, Jody Phelan, Tim Heupink, Annelies Van Rie
Pagina's: 1 - 15 - Variants in bedaquiline-candidate-resistance genes(2022)
Auteurs: Emmanuel Rivière, Lennert Verboven, Anzaan Dippenaar, Sander Goossens, Elise De Vos, Elizabeth Streicher, Bart Cuypers, Kris Laukens, Fathia Ben-Rached, Timothy C. Rodwell, et al.
Pagina's: 1 - 12 - Comparative performance of genomic methods for the detection of pyrazinamide resistance and heteroresistance in Mycobacterium tuberculosis(2022)
Auteurs: Michael G. Whitfield, David M. Engelthaler, Christopher Allender, Megan Folkerts, Tim Heupink, Jason Limberis, Robin M. Warren, Annelies Van Rie, John Z. Metcalfe
- Detection of minor variants in Mycobacterium tuberculosis whole genome sequencing data(2021)
Auteurs: Sander Goossens, Tim Heupink, Elise De Vos, Anzaan Dippenaar, Margaretha De Vos, Rob Warren, Annelies Van Rie
Pagina's: 1 - 9 - Capacity building for whole genome sequencing of Mycobacterium tuberculosis and bioinformatics in high TB burden countries(2021)
Auteurs: Emmanuel Riviere, Tim Heupink, Nabila Ismail, Anzaan Dippenaar, Charlene Clarke, Gemeda Abebe, Peter Heusden, Rob Warren, Conor J. Meehan, Annelies Van Rie
- Comprehensive and accurate genetic variant identification from contaminated and low-coverage **Mycobacterium tuberculosis** whole genome sequencing data(2021)
Auteurs: Tim Heupink, Robin M. Warren, Annelies Van Rie