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Publicatie
Annotating transposable elements in the genome using relational decision tree ensembles
Boekbijdrage - Boekhoofdstuk Conferentiebijdrage
Transposable elements (TEs) are DNA sequences that can
change their location within the genome. They contribute to genetic diversity within and across species and their transposing mechanisms may also affect the functionality of genes. Accurate annotation of TEs is an important step towards understanding their effects on genes and their
role in genome evolution. We introduce a framework for annotating TEs which is based on relational decision tree learning. It allows to naturally represent the structured data and biological processes involving TEs. Furthermore, it also allows the integration of background knowledge and
benets from the interpretability of decision trees. Preliminary experiments show that our method outperforms two state-of-the-art systems for TE annotation.
Boek: Online preprints 23th Conference on Inductive Logic Programming
Pagina's: 1 - 6
Jaar van publicatie:2013
Toegankelijkheid:Open