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proBAMconvert : a conversion tool for proBAM/proBed

Tijdschriftbijdrage - Tijdschriftartikel

The introduction of new standard formats, proBAM and proBed, improves the integration of genomics and proteomics information, thus aiding proteogenomics applications. These novel formats enable peptide spectrum matches (PSM) to be stored, inspected, and analyzed within the context of the genome. However, an easy-to-use and transparent tool to convert mass spectrometry identification files to these new formats is indispensable. proBAMconvert enables the conversion of common identification file formats (mzIdentML, mzTab, and pepXML) to proBAM/proBed using an intuitive interface. Furthermore, ProBAMconvert enables information to be output both at the PSM and peptide levels and has a command line interface next to the graphical user interface. Detailed documentation and a completely worked-out tutorial is available at http://probam.biobix.be.
Tijdschrift: JOURNAL OF PROTEOME RESEARCH
ISSN: 1535-3907
Issue: 7
Volume: 16
Pagina's: 2639 - 2644
Jaar van publicatie:2017
BOF-keylabel:ja
IOF-keylabel:ja
BOF-publication weight:2
CSS-citation score:1
Auteurs:National
Authors from:Higher Education
Toegankelijkheid:Closed