Researcher
Yvan Saeys
- Keywords (Ghent University):machine learning
- Disciplines (Flanders Institute for Biotechnology):Analysis of next-generation sequence data, Adaptive immunology, Bacteriology
- Disciplines (Ghent University):Machine learning and decision making, Health informatics, Single-cell data analysis, Data mining, Computational biomodelling and machine learning, Bio-informatics, Computer science
- See also: Yvan Saeys (Flanders Institute for Biotechnology)
Affiliations
- Department of Applied Mathematics, Computer Science and Statistics (Department)
Member
From1 Feb 2017 → Today - Saeys Lab (Research group)
Responsible
From1 Jan 2017 → Today - Department of Internal medicine (Department)
Member
From1 Oct 2013 → 31 Jan 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From15 Jan 2001 → 30 Sep 2013
Projects
11 - 20 of 38
- Dissecting tissue spatial organization using machine learning and spatial transcriptomicsFrom1 Nov 2020 → 31 Oct 2021Funding: BOF - doctoral mandates
- ‘Immunodeficiency-causing IKAROS mutations in the bright sunlight’,
A comprehensive study characterizing the genetic and immunological heterogeneity in IKAROS-mediated immune diseases.From1 Nov 2020 → 13 Aug 2023Funding: FWO fellowships
- A quantitative evaluation of deep learning techniques for unsupervised and supervised analysis of high-dimensional cytometry dataFrom1 Nov 2020 → 31 Oct 2022Funding: FWO Strategic Basic Research Grant
- iPSC-based parenchymal and sinusoidal liver cell mimics for DILI and NAFLD studies (iPSC-LiMic)From1 Oct 2020 → TodayFunding: FWO Strategic Basic Research (SBO)
- The BD FACS Symphony FACS cell sorter: the most advanced multiparameter fluorescence activated cell sorter that allows the identification and purification of rare cells for further functional characterizationFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
- CONDITIONAL: COvid-19: iNterplay between genetic preDisposITION and immunologicAl LandscapeFrom15 Apr 2020 → 14 Apr 2021Funding: BOF - projects
- Covid-Track: applying quantitative virology and single-cell genomics to unravel the virus-host interactions leading to severe immunopathologies in COVID-19 patientsFrom15 Apr 2020 → 14 Apr 2021Funding: BOF - projects
- Quantifying neural network interpretability: a benchmarking approachFrom1 Jan 2020 → 31 Dec 2023Funding: BOF - doctoral mandates
- Digital innovation for man and societyFrom1 Jan 2020 → TodayFunding: BOF - research organisations
- A human pluripotent stem cell derived differentiation model for the study of normal and transformed sympathoadrenal progenitorsFrom1 Nov 2019 → 31 Oct 2023Funding: FWO fellowships
Publications
1 - 10 of 226
- An introduction to adversarially robust deep learning(2024)
Authors: Jonathan Peck, Bart Goossens, Yvan Saeys
Pages: 2071 - 2090 - Dysregulation of developmental and cell type-specific expression of glycoconjugates on hematopoietic cells : a new characteristic of myelodysplastic neoplasms (MDS)(2023)
Authors: Margot F. van Spronsen, Sophie Horrevorts, Claudia Cali, Theresia M. Westers, Sofie Van Gassen, Yvan Saeys, Sandra J. van Vliet, Yvette van Kooyk, Arjan A. van de Loosdrecht
Pages: 702 - 707 - Ferroptosis and pyroptosis signatures in critical COVID-19 patients(2023)
Authors: Cédric Peleman, Samya Van Coillie, Symen Ligthart, Jan De Waele, Pieter Depuydt, Dominique Benoit, Hannah Schaubroeck, Sven M. Francque, Karolien Dams, Rita Jacobs, et al.
Pages: 2066 - 2077 - Adjuvant dendritic cell-based immunotherapy after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy in patients with malignant peritoneal mesothelioma : a phase II clinical trial(2023)
Authors: Michelle Dietz, Katrien Quintelier, Job P. van Kooten, Nadine L. de Boer, Madelief Vink, Alexandra R. M. Brandt-Kerkhof, Cornelis Verhoef, Yvan Saeys, Joachim G. J. V. Aerts, Marcella Willemsen, et al.
- Gut inflammation in axial spondyloarthritis patients is characterized by a marked type 17 skewed mucosal innate‐like T cell signature(2023)
Authors: Céline Mortier, Katrien Quintelier, Ann-Sophie De Craemer, Thomas Renson, Liselotte Deroo, Emilie Dumas, Eveline Verheugen, Julie Coudenys, Tine Decruy, Zuzanna Łukasik, et al.
Pages: 1969 - 1982 - Sodium perturbs mitochondrial respiration and induces dysfunctional Tregs(2023)
Authors: Beatriz F. Côrte-Real, Ibrahim Hamad, Rebeca Arroyo Hornero, Sabrina Geisberger, Joris Roels, Lauren Van Zeebroeck, Aleksandra Dyczko, Marike W. van Gisbergen, Henry Kurniawan, Allon Wagner, et al.
Pages: 299 - 315 - Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability(2023)
Authors: Anthony Sonrel, Almut Luetge, Charlotte Soneson, Izaskun Mallona, Pierre-Luc Germain, Sergey Knyazev, Jeroen Gilis, Reto Gerber, Ruth Seurinck, Dominique Paul, et al.
- Machine learning pipeline for predicting bone marrow edema along the sacroiliac joints on magnetic resonance imaging(2023)
Authors: Joris Roels, Ann-Sophie De Craemer, Thomas Renson, Manouk de Hooge, Arne Gevaert, Thomas Van Den Berghe, Lennart Jans, Nele Herregods, Philippe Carron, Filip Van den Bosch, et al.
Pages: 2169 - 2177 - A redundant transcription factor network steers spatiotemporal Arabidopsis triterpene synthesis(2023)
Authors: Trang Hieu Nguyen, Louis Thiers, Alex Van Moerkercke, Yuechen Bai, Patricia Fernandez Calvo, Max Minne, Thomas Depuydt, Maite Colinas Martinez, Kevin Verstaen, Gert Van Isterdael, et al.
Pages: 926 - 937 - Cell type-specific attenuation of brassinosteroid signaling precedes stomatal asymmetric cell division(2023)
Authors: Kim Eunji, Cheng Zhang, Boyu Guo, Thomas Eekhout, Anaxi Houbaert, Jos Wendrich, Niels Vandamme, Manish Tiwari, Claire Simon--Vezo, Isabelle Vanhoutte, et al.