Researcher
Yvan Saeys
- Keywords (Ghent University):machine learning
- Disciplines (Flanders Institute for Biotechnology):Analysis of next-generation sequence data, Adaptive immunology, Bacteriology
- Disciplines (Ghent University):Machine learning and decision making, Health informatics, Single-cell data analysis, Data mining, Computational biomodelling and machine learning, Bio-informatics, Computer science
- See also: Yvan Saeys (Flanders Institute for Biotechnology)
Affiliations
- Department of Applied Mathematics, Computer Science and Statistics (Department)
Member
From1 Feb 2017 → Today - Saeys Lab (Research group)
Responsible
From1 Jan 2017 → Today - Department of Internal medicine (Department)
Member
From1 Oct 2013 → 31 Jan 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From15 Jan 2001 → 30 Sep 2013
Projects
1 - 10 of 38
- Single-cell SPACE, the next frontierFrom1 Jan 2024 → TodayFunding: BOF - projects
- Computational cytometry techniques for clinical applicationsFrom1 Oct 2022 → TodayFunding: FWO senior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Cell-cell cOmmuNicaTion As a driver of Cancer cell state identiTy - Decoding the impact of cell-cell communications on the identity of tumor states in skin cancersFrom1 Jan 2022 → TodayFunding: FWO EOS
- Interpretable models for integrative single-cell spatial transcriptomicsFrom1 Nov 2021 → TodayFunding: FWO fellowships
- Aligning patient specific cell development trajectories.From1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Understanding the role of nuclear receptor HNF4a in sepsis and unravel the mechanisms of its loss-of-function in relation to PPARa failure.From1 Nov 2021 → TodayFunding: FWO fellowships
- Clinical applications of computational cytometryFrom1 Oct 2021 → TodayFunding: BOF - postdoctoral mandates
- Modelling intercellular communication in time and spaceFrom1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- Understanding the immunological basis of persistent airway obstruction in asthmaFrom1 Jan 2021 → TodayFunding: BOF - Methusalem
Publications
21 - 30 of 226
- Distinct transcriptional programs in ascitic and solid cancer cells induce different responses to chemotherapy in high-grade serous ovarian cancer(2022)
Authors: Nele Loret, Niels Vandamme, Joachim Taminau, Kato De Clercq, Sven Jonckheere, Kelly Lemeire, Sofie De Prijck, Kevin Verstaen, Steven Weyers, Hannelore Denys, et al.
Pages: 1532 - 1547 - PDD-SHAP: Fast Approximations for Shapley Values using Functional Decomposition(2022)
Authors: Arne Gevaert, Yvan Saeys
Number of pages: 1 - Angiogenesis goes computational : the future way forward to discover new angiogenic targets?(2022)
Authors: Abhishek Subramanian, Pooya Zakeri, Mira Mousa, Halima Alnaqbi, Fatima Yousif Alshamsi, Leo Bettoni, Ernesto Damiani, Habiba Alsafar, Yvan Saeys, Peter Carmeliet
Pages: 5235 - 5255 - A cellular hierarchy in melanoma uncouples growth and metastasis(2022)
Authors: Panagiotis Karras, Ignacio Bordeu, Joanna Pozniak, Ada Nowosad, Cecilia Pazzi, Nina Van Raemdonck, Ewout Landeloos, Yannick Van Herck, Dennis Pedri, Greet Bervoets, et al.
Pages: 190 - 198 - The curse revisited : when are distances informative for the ground truth in noisy high-dimensional data?(2022)Volume: 151
Authors: Robin Vandaele, Bo Kang, Tijl De Bie, Yvan Saeys, G Camps-Valls
Number of pages: 1 - Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches(2022)
Authors: Martin Guilliams, Johnny Bonnardel, Birthe Haest, Bart Vanderborght, Camille Wagner, Anneleen Remmerie, Anna Bujko, Liesbet Martens, Tinne Thoné, Federico Francesco De Ponti, et al.
Pages: 379 - 396 - A machine learning pipeline for prediction of bone marrow oedema along the sacroiliac joints on magnetic resonance imaging(2022)
Authors: Joris Roels, Ann-Sophie De Craemer, Thomas Renson, Manouk de Hooge, Arne Gevaert, Lennart Jans, Nele Herregods, Thomas Van Den Berghe, Philippe Carron, Filip Van den Bosch, et al.
Pages: 12 - 12 - Single-cell RNA and protein profiling of immune cells from the mouse brain and its border tissues(2022)
Authors: Isabelle Scheyltjens, Hannah Van Hove, Karen De Vlaminck, Daliya Kancheva, Jonathan Bastos, Monica Vara-Perez, Ana Rita Pombo Antunes, Liesbet Martens, Charlotte Scott, Jo Van Ginderachter, et al.
Pages: 2354 - 2388 - PeacoQC : peak-based selection of high quality cytometry data(2022)
Authors: Annelies Emmaneel, Katrien Quintelier, Dorine Sichien, Paulina Rybakowska, Concepcion Maranon, Marta E. Alarcon-Riquelme, Gert Van Isterdael, Sofie Van Gassen, Yvan Saeys
Pages: 325 - 338 - TIM3+ TRBV11-2 T cells and IFNγ signature in patrolling monocytes and CD16+ NK cells delineate MIS-C(2022)
Authors: Levi Hoste, Lisa Roels, Leslie Naesens, Victor Bosteels, Stijn Vanhee, Sam Dupont, Cédric Bosteels, Robin Browaeys, Niels Vandamme, Kevin Verstaen, et al.