Researcher
Yvan Saeys
- Keywords (Ghent University):machine learning
- Disciplines (Flanders Institute for Biotechnology):Analysis of next-generation sequence data, Adaptive immunology, Bacteriology
- Disciplines (Ghent University):Machine learning and decision making, Health informatics, Single-cell data analysis, Data mining, Computational biomodelling and machine learning, Bio-informatics, Computer science
- See also: Yvan Saeys (Flanders Institute for Biotechnology)
Affiliations
- Department of Applied Mathematics, Computer Science and Statistics (Department)
Member
From1 Feb 2017 → Today - Saeys Lab (Research group)
Responsible
From1 Jan 2017 → Today - Department of Internal medicine (Department)
Member
From1 Oct 2013 → 31 Jan 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From15 Jan 2001 → 30 Sep 2013
Projects
1 - 10 of 38
- Single-cell SPACE, the next frontierFrom1 Jan 2024 → TodayFunding: BOF - projects
- Computational cytometry techniques for clinical applicationsFrom1 Oct 2022 → TodayFunding: FWO senior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Cell-cell cOmmuNicaTion As a driver of Cancer cell state identiTy - Decoding the impact of cell-cell communications on the identity of tumor states in skin cancersFrom1 Jan 2022 → TodayFunding: FWO EOS
- Interpretable models for integrative single-cell spatial transcriptomicsFrom1 Nov 2021 → TodayFunding: FWO fellowships
- Aligning patient specific cell development trajectories.From1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Understanding the role of nuclear receptor HNF4a in sepsis and unravel the mechanisms of its loss-of-function in relation to PPARa failure.From1 Nov 2021 → TodayFunding: FWO fellowships
- Clinical applications of computational cytometryFrom1 Oct 2021 → TodayFunding: BOF - postdoctoral mandates
- Modelling intercellular communication in time and spaceFrom1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- Understanding the immunological basis of persistent airway obstruction in asthmaFrom1 Jan 2021 → TodayFunding: BOF - Methusalem
Publications
141 - 150 of 226
- Fuzzy rough sets for self-labelling : an exploratory analysis(2016)
Authors: Sarah Vluymans, Neil Mac Parthaláin, Chris Cornelis, Yvan Saeys
Pages: 931 - 938 - GATA1-deficient dendritic cells display impaired CCL21-dependent migration toward lymph nodes due to reduced levels of polysialic acid(2016)
Authors: Maaike R Scheenstra, Iris M De Cuyper, Filipe Branco Madeira, Pieter De Bleser, Mirjam Kool, Marjolein Meinders, Mark Hoogenboezem, Erik Mu, Monika C Wolkers, Fiamma Salerno, et al.
Pages: 4312 - 4324 - Differential expression of lncRNAs during the HIV replication cycle : an underestimated layer in the HIV-host interplay(2016)
Authors: Pejman Mohammadi, Clarissa Van Hecke, Pieter Mestdagh, Yvan Saeys, Pieter De Bleser, Angela Ciuffi, Ward De Spiegelaere
- Fuzzy multi-instance classifiers(2016)
Authors: Sarah Vluymans, Dánel Sánchez Tarragó, Yvan Saeys, Chris Cornelis, Francisco Herrera
Pages: 1395 - 1409 - A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes(2016)
Authors: N Aghaeepour, P Chattopadhyay, M Chikina, Tom Dhaene, Sofie Van Gassen, M Kursa, M Malek, GJ McLachlan, Y Qian, P Qiu, et al.
Pages: 16 - 21 - Computational flow cytometry: helping to make sense of high-dimensional immunology data(2016)
Authors: Yvan Saeys, Sofie Van Gassen
Pages: 449 - 462 - Computational methods for trajectory inference from single-cell transcriptomics(2016)
Authors: Wouter Saelens, Yvan Saeys
Pages: 2496 - 2506 - Unsupervised high-dimensional analysis aligns dendritic cells across tissues and species(2016)
Authors: Martin Guilliams, Charles-Antoine Dutertre, Charlotte Scott, Naomi McGovern, Dorine Sichien, Svetoslav Chakarov, Sofie Van Gassen, Jinmiao Chen, Michael Poidinger, Sofie De Prijck, et al.
Pages: 669 - 684 - Yolk sac macrophages, fetal liver, and adult monocytes can colonize an empty niche and develop into functional tissue-resident macrophages(2016)
Authors: Lianne van de Laar, Wouter Saelens, Sofie De Prijck, Liesbet Martens, Charlotte Scott, Gert Van Isterdael, Eik Hoffmann, Rudi Beyaert, Yvan Saeys, Martin Guilliams
Pages: 755 - 768 - The transcription factor Zeb2 regulates development of conventional and plasmacytoid DCs by repressing Id2(2016)
Authors: Charlotte Scott, Bieke Soen, Liesbet Martens, Nicolas Skrypek, Wouter Saelens, Joachim Taminau, Gert Van Isterdael, Danny Huylebroeck, Jody Haigh, Yvan Saeys, et al.
Pages: 897 - 911