Researcher
Sofie Van Landeghem
- Disciplines:Natural language processing, Bio-informatics, Data mining
Affiliations
- Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Oct 2007 → 31 Dec 2014
Projects
1 - 2 of 2
- Mining the bibliome to help unravel the dynamic behaviour of molecular networksFrom1 Oct 2012 → 31 Dec 2014Funding: BOF - Other initiatives, FWO fellowships
- Knowledge discovery for biological processes by integraing heterogeneous data sourcesFrom1 Oct 2008 → 30 Sep 2012Funding: FWO fellowships, BOF - Other initiatives
Publications
1 - 10 of 21
- Cell line name recognition in support of the identification of synthetic lethality in cancer from text(2016)
Authors: Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo
Pages: 276 - 282 - Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks(2016)
Authors: Sofie Van Landeghem, Thomas Van Parys, Marieke Dubois, Dirk Inzé, Yves Van de Peer
- The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining(2015)
Authors: Dora Szakonyi, Sofie Van Landeghem, Katja Baerenfaller, Lieven Baeyens, Rubén Casanova-Sáez, Stefanie De Bodt, David Esteve-Bruna, Fabio Fiorani, Nathalie Gonzalez Sanchez, Jesper Grønlund, et al.
Pages: 1 - 11 - What is stress? : dose-response effects in commonly used in vitro stress assays(2014)
Authors: Hannes Claeys, Sofie Van Landeghem, Marieke Dubois, Katrien Maleux, Dirk Inzé
Pages: 519 - 527 - The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis(2013)
Authors: Sofie Van Landeghem, Stefanie De Bodt, Zuzanna Drebert, Dirk Inzé, Yves Van de Peer
Pages: 794 - 807 - Large-scale event extraction from literature with multi-level gene normalization(2013)
Authors: Sofie Van Landeghem, Jari Bjorne, Chih-Hsuan Wei, Kai Hakala, Sampo Pyysalo, Sophia Ananiadou, Hung-Yu Kao, Zhiyong Lu, Tapio Salakoski, Yves Van de Peer, et al.
- pico-PLAZA, a genome database of microbial photosynthetic eukaryotes(2013)
Authors: Klaas Vandepoele, Michiel Van Bel, Guilhem Richard, Sofie Van Landeghem, Bram Verhelst, Hervé Moreau, Yves Van de Peer, Nigel Grimsley, Gwenael Piganeau
Pages: 2147 - 2153 - Semantically linking molecular entities in literature through entity relationships(2012)
Authors: Sofie Van Landeghem, Jari Björne, Thomas Abeel, Tapio Salakoski, Yves Van de Peer
- PubMed-scale event extraction for post-translational modifications, epigenetics and protein structural relations(2012)
Authors: Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski
Pages: 82 - 90 - Playing hide and seek on the genomic playground: unveiling biological function from literature(2012)
Authors: Sofie Van Landeghem