Researcher
Sofie Van Gassen
- Disciplines (Flanders Institute for Biotechnology):Analysis of next-generation sequence data, Adaptive immunology, Bacteriology
- Disciplines (Ghent University):Machine learning and decision making, Bio-informatics, Data mining
- See also: Sofie Van Gassen (Flanders Institute for Biotechnology)
Affiliations
- Department of Applied Mathematics, Computer Science and Statistics (Department)
Member
From1 Jan 2018 → Today - Saeys Lab (Research group)
Member
From1 Jan 2017 → Today - Department of Information technology (Department)
Member
From4 Jul 2013 → 31 Dec 2017
Projects
1 - 4 of 4
- Computational cytometry techniques for clinical applicationsFrom1 Oct 2022 → TodayFunding: FWO senior postdoctoral fellowship
- Clinical applications of computational cytometryFrom1 Oct 2021 → TodayFunding: BOF - postdoctoral mandates
- Improving the Diagnosis and Prognosis of Primary Immunodeficiencies using Computational Flow CytometryFrom1 Oct 2018 → 30 Sep 2021Funding: FWO fellowships
- Development of machine learning techniques for flow cytometry dataFrom1 Jan 2014 → 31 Dec 2017Funding: IWT personal funding - specialisation scholarships
Publications
21 - 30 of 39
- Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition)(2019)
Authors: Andrea Cossarizza, Hyun-Dong Chang, Andreas Radbruch, Andreas Acs, Dieter Adam, Sabine Adam-Klages, William W Agace, Nima Aghaeepour, Muebeccel Akdis, Matthieu Allez, et al.
Pages: 1457 - 1973 - A human immune dysregulation syndrome characterized by severe hyperinflammation with a homozygous nonsense Roquin-1 mutation(2019)
Authors: Simon Tavernier, V Athanasopoulos, PATRICK VERLOO, G Behrens, Jens Staal, Delfien Bogaert, Leslie Naesens, Marieke De Bruyne, Sofie Van Gassen, Eef Parthoens, et al.
- The ORMDL3 asthma susceptibility gene regulates systemic ceramide levels without altering key asthma features in mice(2019)
Authors: Nincy Debeuf, Assem Zhakupova, Regula Steiner, Sofie Van Gassen, Kim Deswarte, Farzaneh Fayazpour, Justine Van Moorleghem, Karl Vergote, Benjamin Pavie, Kelly Lemeire, et al.
Pages: 1648 - 1659 - A computational pipeline for the diagnosis of CVID patients(2019)
Authors: Annelies Emmaneel, Delfien Bogaert, Sofie Van Gassen, Simon Tavernier, Melissa Dullaers, Filomeen Haerynck, Yvan Saeys
- Stabilization of cytokine mRNAs in iNKT cells requires the serine-threonine kinase IRE1alpha(2018)
Authors: Renée Van der Cruyssen, Eveline Verheugen, Sofie Van Gassen, Yvan Saeys, Takao Iwawaki, Yehudi Bloch, Savvas Savvides, Michael Drennan
- Response to Orlova et al. 'Science not art: statistically sound methods for identifying subsets in multi-dimensional flow and mass cytometry data sets'(2018)
Authors: Yvan Saeys, Sofie Van Gassen
Pages: 78 - 78 - Myeloid cell heterogeneity in cancer: not a single cell alike(2018)
Authors: Mate Kiss, Sofie Van Gassen, Kiavash Movahedi, Yvan Saeys, Damya Laoui
Pages: 188 - 201 - Development of machine learning techniques for flow cytometry data(2017)
Authors: Sofie Van Gassen
- An immune clock of human pregnancy(2017)
Authors: Nima Aghaeepour, Edward A Ganio, David Mcilwain, Amy S Tsai, Martha Tingle, Sofie Van Gassen, Dyani K Gaudilliere, Quentin Baca, Leslie McNeil, Robin Okada, et al.
- IRF8 transcription factor controls survival and function of terminally differentiated conventional and plasmacytoid dendritic cells, respectively(2016)
Authors: Dorine Sichien, Charlotte Scott, Liesbet Martens, Matthias Vanderkerken, Sofie Van Gassen, Maud Plantinga, Thorsten Joeris, Sofie De Prijck, Leen Vanhoutte, Manon Vanheerswynghels, et al.
Pages: 626 - 640