Researcher
Sofie Van Gassen
- Disciplines (Flanders Institute for Biotechnology):Analysis of next-generation sequence data, Adaptive immunology, Bacteriology
- Disciplines (Ghent University):Machine learning and decision making, Bio-informatics, Data mining
- See also: Sofie Van Gassen (Flanders Institute for Biotechnology)
Affiliations
- Department of Applied Mathematics, Computer Science and Statistics (Department)
Member
From1 Jan 2018 → Today - Saeys Lab (Research group)
Member
From1 Jan 2017 → Today - Department of Information technology (Department)
Member
From4 Jul 2013 → 31 Dec 2017
Projects
1 - 4 of 4
- Computational cytometry techniques for clinical applicationsFrom1 Oct 2022 → TodayFunding: FWO senior postdoctoral fellowship
- Clinical applications of computational cytometryFrom1 Oct 2021 → TodayFunding: BOF - postdoctoral mandates
- Improving the Diagnosis and Prognosis of Primary Immunodeficiencies using Computational Flow CytometryFrom1 Oct 2018 → 30 Sep 2021Funding: FWO fellowships
- Development of machine learning techniques for flow cytometry dataFrom1 Jan 2014 → 31 Dec 2017Funding: IWT personal funding - specialisation scholarships
Publications
1 - 10 of 39
- Dysregulation of developmental and cell type-specific expression of glycoconjugates on hematopoietic cells : a new characteristic of myelodysplastic neoplasms (MDS)(2023)
Authors: Margot F. van Spronsen, Sophie Horrevorts, Claudia Cali, Theresia M. Westers, Sofie Van Gassen, Yvan Saeys, Sandra J. van Vliet, Yvette van Kooyk, Arjan A. van de Loosdrecht
Pages: 702 - 707 - Adjuvant dendritic cell-based immunotherapy after cytoreductive surgery and hyperthermic intraperitoneal chemotherapy in patients with malignant peritoneal mesothelioma : a phase II clinical trial(2023)
Authors: Michelle Dietz, Katrien Quintelier, Job P. van Kooten, Nadine L. de Boer, Madelief Vink, Alexandra R. M. Brandt-Kerkhof, Cornelis Verhoef, Yvan Saeys, Joachim G. J. V. Aerts, Marcella Willemsen, et al.
- Gut inflammation in axial spondyloarthritis patients is characterized by a marked type 17 skewed mucosal innate‐like T cell signature(2023)
Authors: Céline Mortier, Katrien Quintelier, Ann-Sophie De Craemer, Thomas Renson, Liselotte Deroo, Emilie Dumas, Eveline Verheugen, Julie Coudenys, Tine Decruy, Zuzanna Łukasik, et al.
Pages: 1969 - 1982 - Single-cell molecular profiling using ex vivo functional readouts fuels precision oncology in glioblastoma(2023)
Authors: Dena Panovska, Pouya Nazari, Basiel Cole, Pieter-Jan Creemers, Marleen Derweduwe, Lien Solie, Sofie Van Gassen, Annelies Claeys, Tatjana Verbeke, Elizabeth F. Cohen, et al.
- Protocol for large scale whole blood immune monitoring by mass cytometry and Cyto Quality Pipeline(2022)
Authors: P Rybakowska, Sofie Van Gassen, J Martorell Marugán, Katrien Quintelier, Yvan Saeys, ME Alarcón-Riquelme, C Marañón
- The Euroflow PID Orientation Tube in the diagnostic workup of primary immunodeficiency : daily practice performance in a tertiary university hospital(2022)
Authors: Jana Neirinck, Annelies Emmaneel, Jan Philippé, Sofie Van Gassen, Yvan Saeys, Xavier Bossuyt, Stefanie De Buyser, Mirjam van der Burg, Martin Perez-Andres, Alberto Orfao, et al.
- Operational tolerance after hematopoietic stem cell transplantation is characterized by distinct transcriptional, phenotypic, and metabolic signatures(2022)
Authors: Laetitia Dubouchet, Helena Todorov, Nicolas Vallet, Sofie Van Gassen, Aurelien Corneau, Catherine Blanc, Habib Zouali, Anne Boland, Jean-Francois Deleuze, Brian Ingram, et al.
- PeacoQC : peak-based selection of high quality cytometry data(2022)
Authors: Annelies Emmaneel, Katrien Quintelier, Dorine Sichien, Paulina Rybakowska, Concepcion Maranon, Marta E. Alarcon-Riquelme, Gert Van Isterdael, Sofie Van Gassen, Yvan Saeys
Pages: 325 - 338 - Presence of innate lymphoid cells in allogeneic hematopoietic grafts correlates with reduced graft-versus-host disease(2022)
Authors: Anna Kroeze, Vera van Hoeven, Myrddin W. Verheij, Annelies W. Turksma, Naomi Weterings, Sofie Van Gassen, Sacha S. Zeerleder, Bianca Blom, Carlijn Voermans, Mette D. Hazenberg
Pages: 302 - 310 - Stabilization of human whole blood samples for multicenter and retrospective immunophenotyping studies(2021)
Authors: Paulina Rybakowska, Catalina Burbano, Sofie Van Gassen, Nieves Varela, Rocio Aguilar-Quesada, Yvan Saeys, Marta E. Alarcon-Riquelme, Concepcion Maranon
Pages: 524 - 537