Researcher
Petra Van Damme
- Keywords:proteomics, bacterial pathogen, riboproteogenomics, proteoforms, host-microbe interaction, genome (re-)annotation, (alternative) translation initiation
- Disciplines:Transcription and translation, Proteomics, Transcriptomics, Interactomics, Infectious diseases
Affiliations
- Department of Biochemistry and microbiology (Department)
Member
From1 Mar 2019 → Today - Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → 28 Feb 2019 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 May 2018 → 30 Sep 2018 - Department of Biochemistry (Department)
Member
From1 Feb 2003 → 30 Sep 2018 - Department of Biomedical molecular biology (Department)
Member
From1 Jan 2002 → 31 Aug 2002
Projects
1 - 10 of 10
- Novel mechanisms of inflammation and cell death regulation in autoinflammatory and infectious diseasesFrom1 Jan 2023 → TodayFunding: BOF - projects
- Microarrays for the phenotypic characterization of axenic cultures, bacterial mutants and microbiome communitiesFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Unraveling the heterogeneous nature of host/pathogen encounters and their role in bacterial pathogenesis.From1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- Preparative and analytical ultracentrifugation to aid integrative, multi-omics studies.From1 Dec 2020 → 30 Nov 2022Funding: BOF - scientific equipment program
- A MALDI-8020 mass spectrometer for peptide and protein analysis.From1 Dec 2020 → 30 Nov 2022Funding: BOF - scientific equipment program
- Riboproteogenomics of the sORF-encoded Salmonella peptidomeFrom1 Jan 2020 → 31 Dec 2023Funding: FWO research project (including WEAVE projects)
- Proteogenomic-assisted exploration of the molecular mechanisms underlying Salmonella infectionFrom1 Oct 2019 → 31 Mar 2022Funding: BOF - postdoctoral mandates
- Riboproteogenomics in aid of bacterial pathogen/host interaction studiesFrom15 Apr 2019 → 14 Feb 2024Funding: BOF - projects
- PROPHECY: Translational control in infection biology: riboproteogenomics of bacterial pathogensFrom1 Nov 2018 → 31 Oct 2023Funding: H2020-EU.1.1. - EXCELLENT SCIENCE - European Research Council (ERC)
- Special Research Fund Professorship in proteomicsFrom1 Oct 2018 → TodayFunding: BOF - ZAP BOF mandates
Publications
11 - 20 of 38
- Ablation of elongation factor 2 kinase enhances heat-shock protein 90 chaperone expression and protects cells under proteotoxic stress(2019)
Authors: Jianling Xie, Petra Van Damme, Danielle Fang, Christopher G. Proud
Pages: 7169 - 7176 - Omics assisted N-terminal proteoform and protein expression profiling on methionine aminopeptidase 1 (MetAP1) deletion(2018)
Authors: Veronique Jonckheere, Daria Fijalkowska, Petra Van Damme
Pages: 694 - 708 - Limitless translation limits translation(2018)
Authors: Petra Van Damme
Pages: 289 - 290 - N-terminal proteomics assisted profiling of the unexplored translation initiation landscape in Arabidopsis thaliana(2017)
Authors: Patrick Willems, Elvis Ndah, Veronique Jonckheere, Simon Stael, Adriaan Sticker, Lennart Martens, Frank Van Breusegem, Kris Gevaert, Petra Van Damme
Pages: 1064 - 1080 - Noncoding after all : biases in proteomics data do not explain observed absence of lncRNA translation products(2017)
Authors: Kenneth Verheggen, Pieter-Jan Volders, Pieter Mestdagh, Gerben Menschaert, Petra Van Damme, Kris Gevaert, Lennart Martens, Jo Vandesompele
Pages: 2508 - 2515 - Identification of carboxypeptidase substrates by C-terminal COFRADIC(2017)Series: Methods in Molecular Biology
Authors: Sebastian Tanco, Francesc Xavier Aviles, Kris Gevaert, Julia Lorenzo, Petra Van Damme, Oliver Schilling
Pages: 115 - 133 - Protease substrate profiling by N-terminal COFRADIC(2017)Series: Methods in Molecular Biology
Authors: An Staes, Petra Van Damme, Evy Timmerman, Bart Ruttens, Elisabeth Stes, Kris Gevaert, Francis Impens, Oliver Schilling
Pages: 51 - 76 - Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms(2016)
Authors: Om Singh Rathore, Alexandra Faustino, Pedro Prudêncio, Petra Van Damme, Cymon J Cox, Rui Gonçalo Martinho
- A role for human N-alpha acetyltransferase 30 (Naa30) in maintaining mitochondrial integrity(2016)
Authors: Petra Van Damme, Thomas V Kalvik, Kristian W Starheim, Veronique Jonckheere, Line M Myklebust, Gerben Menschaert, Jan Erik Varhaug, Kris Gevaert, Thomas Arnesen
Pages: 3361 - 3372 - Proteomic identification of cysteine cathepsin substrates shed from the surface of cancer cells(2015)
Authors: Barbara Sobotic, Matej Vizovisek, Robert Vidmar, Petra Van Damme, Vasilena Gocheva, Johanna A Joyce, Kris Gevaert, Vito Turk, Boris Turk, Marko Fonovic
Pages: 2213 - 2228