Researcher
Petra Van Damme
- Keywords:proteomics, bacterial pathogen, riboproteogenomics, proteoforms, host-microbe interaction, genome (re-)annotation, (alternative) translation initiation
- Disciplines:Transcription and translation, Proteomics, Transcriptomics, Interactomics, Infectious diseases
Affiliations
- Department of Biochemistry and microbiology (Department)
Member
From1 Mar 2019 → Today - Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → 28 Feb 2019 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 May 2018 → 30 Sep 2018 - Department of Biochemistry (Department)
Member
From1 Feb 2003 → 30 Sep 2018 - Department of Biomedical molecular biology (Department)
Member
From1 Jan 2002 → 31 Aug 2002
Projects
1 - 10 of 18
- Microarrays for the phenotypic characterization of axenic cultures, bacterial mutants and microbiome communitiesFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Unraveling the heterogeneous nature of host/pathogen encounters and their role in bacterial pathogenesis.From1 Jan 2021 → TodayFunding: FWO research project
- A MALDI-8020 mass spectrometer for peptide and protein analysis.From1 Dec 2020 → 30 Nov 2022Funding: BOF - scientific equipment program
- Preparative and analytical ultracentrifugation to aid integrative, multi-omics studies.From1 Dec 2020 → 30 Nov 2022Funding: BOF - scientific equipment program
- Identification of in planta secreted fungal effectors and characterization of their interacting tomato proteins to ameliorate arbuscular mycorrhiza-based agricultureFrom1 Nov 2020 → 31 Oct 2022Funding: FWO Strategic Basic Research Grant
- Riboproteogenomics of the sORF-encoded Salmonella peptidomeFrom1 Jan 2020 → TodayFunding: FWO research project
- Towards molecular insights into the arbuscular mycorrhizal fungal-plant interface for improved tomato yield upon drought.From1 Nov 2019 → 22 Jul 2022Funding: FWO Strategic Basic Research Grant
- Protein interplay during the establishment of arbuscular mycorrhiza: revealing the function of tomato root proteins interacting with fungal plant effectorsFrom1 Nov 2019 → TodayFunding: FWO junior postdoctoral fellowship
- Proteogenomic-assisted exploration of the molecular mechanisms underlying Salmonella infectionFrom1 Oct 2019 → 31 Mar 2022Funding: BOF - postdoctoral mandates
- Riboproteogenomics in aid of bacterial pathogen/host interaction studiesFrom15 Apr 2019 → TodayFunding: BOF - projects
Publications
1 - 10 of 91
- Identification of plant protein-metabolite interactions by limited proteolysis-coupled mass spectrometry (LiP-MS)(2023)Series: Methods in Molecular Biology
Authors: Jhon Jairo Venegas Molina, Petra Van Damme, Alain Goossens, Aleksandra Skirycz, Marcin Luzarowski, Jennifer C. Ewald
Pages: 47 - 67 - Hidden in plain sight : challenges in proteomics detection of small ORF-encoded polypeptides(2022)
Authors: Igor Fijalkowski, Patrick Willems, Veronique Jonckheere, Laure Simoens, Petra Van Damme
- Small protein enrichment improves proteomics detection of sORF encoded polypeptides(2021)
Authors: Igor Fijalkowski, Marlies Peeters, Petra Van Damme
- Capturing salmonella SspH2 host targets in virus-like particles(2021)
Authors: Margaux De Meyer, Igor Fijalkowski, Veronique Jonckheere, Delphine De Sutter, Sven Eyckerman, Petra Van Damme
- Charting the N-terminal acetylome : a comprehensive map of human NatA substrates(2021)
Authors: Petra Van Damme
- Mechanisms of congenital heart disease caused by NAA15 haploinsufficiency(2021)
Authors: Tarsha L. Ward, Warren Tai, Sarah U. Morton, Francis Impens, Petra Van Damme, Delphi Van Haver, Evy Timmerman, Gabriela Venturini, Kehan Zhang, Min Young Jang, et al.
Pages: 1156 - 1169 - N-terminal acetyltransferase Naa40p whereabouts put into N-terminal proteoform perspective(2021)
Authors: Veronique Jonckheere, Petra Van Damme
- Bacterial riboproteogenomics : the era of N-terminal proteoform existence revealed(2020)
Authors: Daria Fijalkowska, Igor Fijalkowski, Patrick Willems, Petra Van Damme
Pages: 418 - 431 - Bacterial genetic engineering by means of recombineering for reverse genetics(2020)
Authors: Ursula Fels, Kris Gevaert, Petra Van Damme
- Establishment of proximity-dependent biotinylation approaches in different plant model systems(2020)
Authors: Deepanksha Arora, Nikolaj B. Abel, Chen Liu, Petra Van Damme, Klaas Yperman, Dominique Eeckhout, Lam Dai Vu, Jie Wang, Anna Tornkvist, Francis Impens, et al.
Pages: 3388 - 3407