Researcher
Petra Van Damme
- Keywords:proteomics, bacterial pathogen, riboproteogenomics, proteoforms, host-microbe interaction, genome (re-)annotation, (alternative) translation initiation, Biomedical sciences (incl. biochemistry), Chemical engineering and applied chemistry, Chemistry (incl. biochemistry)
- Disciplines:Transcription and translation, Proteomics, Transcriptomics, Interactomics, Infectious diseases
Affiliations
- Department of Biochemistry and microbiology (Department)
Member
From1 Mar 2019 → Today - Department of Biomolecular Medicine (Department)
Member
From1 Oct 2018 → 28 Feb 2019 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 May 2018 → 30 Sep 2018 - Department of Biochemistry (Department)
Member
From1 Oct 2004 → 30 Sep 2018
Projects
1 - 10 of 10 results
- Protein interplay during the establishment of arbuscular mycorrhiza: revealing the function of tomato root proteins interacting with fungal plant effectorsFrom1 Oct 2019 → TodayFunding: FWO fellowships
- Proteogenomic-assisted exploration of the molecular mechanisms underlying Salmonella infectionFrom1 Oct 2019 → TodayFunding: BOF - Doctoral projects (pro memore - non-attributable)
- Riboproteogenomics in aid of bacterial pathogen/host interaction studiesFrom15 Apr 2019 → TodayFunding: BOF - Doctoral projects (pro memore - non-attributable)
- Mapping the tomato protein network exploited by type III effectors involved in bacterial wiltFrom1 Jan 2019 → TodayFunding: FWO Strategic Basic Research Grant
- Translational control in infection biology: the role of sORFs in Salmonella pathogenesis. From1 Oct 2016 → 30 Sep 2019Funding: FWO fellowships
- The study of N-terminal protein variants, their stability and localization by means of ribosome profiling and positional proteomicsFrom1 Jan 2014 → 31 Dec 2016Funding: FWO research project
- W&T scholarship Elena SperanskayaFrom1 Jun 2013 → 31 Jan 2015Funding: Geopolitical funding in general (R&D collaboration with Central and Eastern Europe
- Complementary use of ribosome profiling and positional proteomics for mapping the translation initiation and nascent protein modification landscape in human cell linesFrom1 Jan 2013 → 31 Dec 2018Funding: FWO research project
- Development of C-terminal peptide-based proteome-analytical strategies and the extensive mapping of the granzyme substrate-repertoireFrom1 Jan 2010 → 31 Dec 2012Funding: FWO research grant KAN
- Granzyme-mediated cell-targeted and antiviral methods-of-action: a targeted proteomic analysisFrom1 Oct 2008 → 30 Sep 2014Funding: FWO fellowships, BOF - Other initiatives
Publications
1 - 10 of 70 results
- N-terminal acetylation levels are maintained during acetyl-CoA deficiency in Saccharomyces cerevisiae(2018)Journal: Molecular & Cellular ProteomicsISSN: 1535-9476Issue: 12Volume: 17
Authors: Sylvia Varland, Henriette Aksnes, Fedor Kryuchkov, Francis Impens, Delphi Van Haver, Veronique Jonckheere, Mathias Ziegler, Kris Gevaert, Petra Van Damme, Thomas Arnesen
Pages: 2308 - 2323 - Limitless translation limits translation(2018)Journal: NatureISSN: 0028-0836Issue: 7688Volume: 553
Authors: Petra Van Damme
Pages: 289 - 290 - N-terminal proteomics assisted profiling of the unexplored translation initiation landscape in Arabidopsis thaliana(2017)Journal: Molecular & Cellular ProteomicsISSN: 1535-9476Issue: 6Volume: 16
Authors: Patrick Willems, Elvis Ndah, Veronique Jonckheere, Simon Stael, Adriaan Sticker, Lennart Martens, Frank Van Breusegem, Kris Gevaert, Petra Van Damme
Pages: 1064 - 1080 - Protease substrate profiling by N-terminal COFRADIC(2017)Book: Protein terminal profiling : methods and protocolsSeries: Methods in Molecular Biology
Authors: An Staes, Petra Van Damme, Evy Timmerman, Bart Ruttens, Elisabeth Stes, Kris Gevaert, Francis Impens, Oliver Schilling
Pages: 51 - 76 - eIF1 modulates the recognition of suboptimal translation initiation sites and steers gene expression via uORFs(2017)Journal: Nucleic Acids ResearchISSN: 0305-1048Issue: 13Volume: 45
Authors: Daria Fijalkowska, Steven Verbruggen, Elvis Ndah, Veronique Jonckheere, Gerben Menschaert, Petra Van Damme
Pages: 7997 - 8013 - REPARATION : ribosome profiling assisted (re-)annotation of bacterial genomes(2017)Journal: Nucleic Acids ResearchISSN: 0305-1048Issue: 20Volume: 45
Authors: Elvis Ndah, Veronique Jonckheere, Adam Giess, Eivind Valen, Gerben Menschaert, Petra Van Damme
Number of pages: 1 - Proteogenomics in aid of host-pathogen interaction studies : a bacterial perspective(2017)Journal: PROTEOMESISSN: 2227-7382Issue: 4Volume: 5
Authors: Ursula Fels, Kris Gevaert, Petra Van Damme
Number of pages: 1 - Noncoding after all : biases in proteomics data do not explain observed absence of lncRNA translation products(2017)Journal: Journal of Proteome ResearchISSN: 1535-3893Issue: 7Volume: 16
Authors: Kenneth Verheggen, Pieter-Jan Volders, Pieter Mestdagh, Gerben Menschaert, Petra Van Damme, Kris Gevaert, Lennart Martens, Joke Vandesompele
Pages: 2508 - 2515 - Absence of N-terminal acetyltransferase diversification during evolution of eukaryotic organisms(2016)Journal: Scientific ReportsVolume: 6
Authors: Om Singh Rathore, Alexandra Faustino, Pedro Prudêncio, Petra Van Damme, Cymon J Cox, Rui Gonçalo Martinho
Number of pages: 1 - Positional proteomics reveals differences in N-terminal proteoform stability(2016)Journal: Molecular Systems BiologyISSN: 1744-4292Issue: 2Volume: 12
Authors: Daria Fijalkowska, Elvis Ndah, Kris Gevaert, Petra Van Damme
Number of pages: 1