Researcher
Klaas Vandepoele
- Keywords (Ghent University):systems biology, Plant biotechnology, bio-informatics
- Disciplines (Flanders Institute for Biotechnology):Cell death and senescence, Invasion biology, Epigenomics, Auto-ecology, Biogeography and phylogeography
- Disciplines (Ghent University):Ontologies, data curation and text mining, Development of bioinformatics software, tools and databases, Systems biology not elsewhere classified, Plant cell and molecular biology, Single-cell data analysis, Analysis of next-generation sequence data, Bioinformatics and computational biology not elsewhere classified, Bioinformatics data integration and network biology
- See also: Klaas Vandepoele (Flanders Institute for Biotechnology)
Affiliations
- Vandepoele Lab (Research group)
Responsible
From1 Jan 2018 → Today - De Veylder Lab (Research group)
Member
From1 Jan 2017 → 31 Dec 2017 - Department of Plant Biotechnology and Bioinformatics (Department)
Member
From1 Dec 2000 → Today
Infrastructure
1 - 1 of 1
- ELIXIR Belgium (Consortium partner)
Projects
1 - 10 of 18
- The secret garden: diatom adaptation and evolution in benthic environmentsFrom1 Jan 2023 → TodayFunding: BOF - projects
- Assessment of the roles of endogenous and environmental cues controlling cell size distribution and sexual reproduction in benthic diatom populationsFrom1 Nov 2022 → TodayFunding: FWO fellowships
- Charting the functional components of the diverse sexual life cycles in diatomsFrom1 Oct 2022 → TodayFunding: FWO junior postdoctoral fellowship
- SpatialConnect: linking tissue biology to the new era of single-cell spatial transcriptomicsFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Identification of the gene regulatory networks controlling vascular development in plants – a comparative approach at single-cell resolutionFrom1 Oct 2021 → 14 Oct 2022Funding: FWO junior postdoctoral fellowship
- Enzyme biodiscovery pipeline optimisation via toolbox developmentFrom1 Sep 2021 → TodayFunding: VLAIO - Catalisti - cSBO
- Software development for gene-trait discovery and prioritization in agricultural biotechnology using single-cell genomicsFrom1 Jun 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Reproductive barriers, interspecific gene flow and diversification in a globally distributed pennate diatomFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- From model species to crop: enhancing the translation of functional traits in plants using an integrative network-based approach.From1 Oct 2019 → TodayFunding: BOF - projects
- ELIXIR Infrastructure for Data and Services to strengthen Life-Sciences Research in FlandersFrom1 Jan 2019 → 31 Dec 2022Funding: FWO International research infrastructure (IRI)
Publications
11 - 20 of 133
- Chromosome-scale assembly and annotation of the perennial ryegrass genome(2022)
Authors: Istvan Nagy, Chang Liu, Michiel Van Bel, Klaas Vandepoele, Christian Sig Jensen, Tom Ruttink, Torben Asp
- Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators(2022)Volume: 189
Authors: Inge De Clercq, Jan Van de Velde, Xiaopeng Luo, Li Liu, Veronique Storme, Michiel Van Bel, Robin Pottie, Dries Vaneechoutte, Frank Van Breusegem, Klaas Vandepoele
Pages: 48 - 49 - Spatiotemporal expression profile of novel and known small RNAs throughout rice plant development focussing on seed tissues(2022)
Authors: Aniko Meijer, Tim De Meyer, Klaas Vandepoele, Tina Kyndt
- The quest for orthologs Orthology Benchmark Service in 2022(2022)
Authors: Laia Codo, Elspeth A Bruford, Salvatore Cosentino, Ingo Ebersberger, Natasha Glover, Cristina Guijarro-Clarke, Mark Hickman, Tamsin E M Jones, Dushyanth Jyothi, Arnaud Kress, et al.
Pages: W623 - W632 - Charting plant gene functions in the multi-omics and single-cell era(2022)
Authors: Thomas Depuydt, Bert De Rybel, Klaas Vandepoele
Pages: 283 - 296 - The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization(2022)
Authors: Andres Jaramillo-Botero, Julian Colorado, Mauricio Quimbaya, Maria Camila Rebolledo, Mathias Lorieux, Thaura Ghneim-Herrera, Carlos A. Arango, Luis E. Tobón, Jorge Finke, Camilo Rocha, et al.
- The gene regulation knowledge commons : the action area of GREEKC(2022)
Authors: Martin Kuiper, Joseph Bonello, Jesualdo T. Fernández-Breis, Philipp Bucher, Matthias E. Futschik, Pascale Gaudet, Ivan V. Kulakovskiy, Luana Licata, Colin Logie, Ruth C. Lovering, et al.
- Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms(2021)
Authors: Petra Bulánková, Mirna Sekulić, Denis Jallet, Charlotte Nef, Cock van Oosterhout, Tom O. Delmont, Ilse Vercauteren, Cristina Maria Osuna Cruz, Emmelien Vancaester, Thomas Mock, et al.
Pages: 3221 - 3232.e9 - Evolutionary genomics of sex-related chromosomes at the base of the green lineage(2021)
Authors: Luis Felipe Benites, François Bucchini, Sophie Sanchez-Brosseau, Nigel Grimsley, Klaas Vandepoele, Gwenaël Piganeau
- Comparative genomics reveals new functional insights in uncultured MAST species(2021)
Authors: Aurelie Labarre, David López-Escardó, Francisco Latorre, Guy Leonard, François Bucchini, Aleix Obiol, Corinne Cruaud, Michael E. Sieracki, Olivier Jaillon, Patrick Wincker, et al.
Pages: 1767 - 1781