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Researcher
Karoline Faust
- Disciplines:Analysis of next-generation sequence data, Bioinformatics data integration and network biology, Computational biomodelling and machine learning, Development of bioinformatics software, tools and databases, Single-cell data analysis, Community ecology, Microbiomes, Bacteriology, Microbiome
Affiliations
- Laboratory of Molecular Bacteriology (Rega Institute) (Division)
Member
From30 Apr 2014 → Today
Projects
1 - 10 of 15
- Exploration of the factors influencing successful invasion of a synthetic human gut community by probiotic strainsFrom20 Sep 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- PhD: Investigating the response of a synthetic human gut community to perturbationsFrom23 Nov 2021 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Three-dimensional holo’omic landscapes to unveil host-microbiota interactions shaping animal productionFrom1 Sep 2021 → TodayFunding: H2020 - Food security, sustainable agriculture, marine and maritime research and the bio-economy
- Towards development of novel tools for plastic degradation pathway discovery from meta-omics dataFrom10 May 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Parallel mini-bioreactor system boosting human microbial community and phage-biology and -biotechnology researchFrom1 Jan 2021 → 31 Dec 2022Funding: BOF - scientific equipment program
- Microbial community control: from theory to practiceFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- Development of new biodegradable plastics through Daphnia microbiomesFrom1 Oct 2020 → TodayFunding: BOF - projects
- Microbial interactions in hydrogen-oxidizing communitiesFrom10 Jun 2020 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Single-Cell Analysis and Metabolic Modelling of Pairwise Interactions in the Gut MicrobiomeFrom4 Mar 2019 → 4 Jul 2023Funding: Own budget, for example: patrimony, inscription fees, gifts
- Characterization of a thermophilic acidogenic microbial community treating organic waste and producing the high commodity chemical n-caproate using a combination of culturomics and meta-omicsFrom1 Mar 2019 → 30 Nov 2023Funding: Foreign foundations, funds with scientific view
Publications
31 - 40 of 61
- Can we predict keystones?(2018)
Authors: Lisa Röttjers, Karoline Faust
Pages: 193 - 193 - From hairballs to hypotheses-biological insights from microbial networks(2018)
Authors: Karoline Faust
Pages: 761 - 780 - Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community(2018)
Authors: Kevin D'hoe, Karoline Faust, Gwen Falony, Veronica Llorens-Rico Llorens-Rico, Lendert Gelens, Jeroen Raes
- Genetic correlation network prediction of forest soil microbial functional organization(2018)
Authors: Karoline Faust
Pages: 2492 - 2505 - Microbial communities as dynamical systems(2018)
Authors: Leo Lahti, Karoline Faust
Pages: 41 - 49 - Structure of association networks in food bacterial communities(2018)
Authors: Karoline Faust
Pages: 49 - 60 - Signatures of ecological processes in microbial community time series(2018)
Authors: Karoline Faust, Leo Lahti
- Bistability in a system of two species interacting through mutualism as well as competition: Chemostat vs. Lotka-Volterra equations(2018)
Authors: Karoline Faust, Lendert Gelens
- Multi-stability and the origin of microbial community types(2017)
Authors: Leo Lahti, Jeroen Raes, Karoline Faust
Pages: 2159 - 2166 - Combined use of network inference tools identifies ecologically meaningful bacterial associations in a paddy soil(2017)
Authors: Karoline Faust, Jeroen Raes
Pages: 227 - 235