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Researcher
Karoline Faust
- Disciplines:Analysis of next-generation sequence data, Bioinformatics data integration and network biology, Computational biomodelling and machine learning, Development of bioinformatics software, tools and databases, Single-cell data analysis, Community ecology, Microbiomes, Bacteriology, Microbiome
Affiliations
- Laboratory of Molecular Bacteriology (Rega Institute) (Division)
Member
From30 Apr 2014 → Today
Projects
1 - 10 of 15
- Exploration of the factors influencing successful invasion of a synthetic human gut community by probiotic strainsFrom20 Sep 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- PhD: Investigating the response of a synthetic human gut community to perturbationsFrom23 Nov 2021 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Three-dimensional holo’omic landscapes to unveil host-microbiota interactions shaping animal productionFrom1 Sep 2021 → TodayFunding: H2020 - Food security, sustainable agriculture, marine and maritime research and the bio-economy
- Towards development of novel tools for plastic degradation pathway discovery from meta-omics dataFrom10 May 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Parallel mini-bioreactor system boosting human microbial community and phage-biology and -biotechnology researchFrom1 Jan 2021 → 31 Dec 2022Funding: BOF - scientific equipment program
- Microbial community control: from theory to practiceFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- Development of new biodegradable plastics through Daphnia microbiomesFrom1 Oct 2020 → TodayFunding: BOF - projects
- Microbial interactions in hydrogen-oxidizing communitiesFrom10 Jun 2020 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Single-Cell Analysis and Metabolic Modelling of Pairwise Interactions in the Gut MicrobiomeFrom4 Mar 2019 → 4 Jul 2023Funding: Own budget, for example: patrimony, inscription fees, gifts
- Characterization of a thermophilic acidogenic microbial community treating organic waste and producing the high commodity chemical n-caproate using a combination of culturomics and meta-omicsFrom1 Mar 2019 → 30 Nov 2023Funding: Foreign foundations, funds with scientific view
Publications
21 - 30 of 61
- Null-model-based network comparison reveals core associations(2021)
Authors: Doris Vandeputte, Jeroen Raes, Karoline Faust
- Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics(2021)
Authors: Karoline Faust
Pages: 123 - + - Earth microbial co-occurrence network reveals interconnection pattern across microbiomes(2020)
Authors: Karoline Faust
- manta: a Clustering Algorithm for Weighted Ecological Networks(2020)
Authors: Karoline Faust
- Synthetic ecology of the human gut microbiota(2019)
Authors: Karoline Faust, Jeroen Raes
Pages: 754 - 763 - Gut microbiota dynamics and uraemic toxins: one size does not fit all(2019)
Authors: Marie Joossens, Karoline Faust, Tessa Gryp, Sunny Eloot, Gwen Falony, Jeroen Raes
Pages: 2257 - 2260 - Consumer Safety Considerations of Skin and Oral Microbiome Perturbation(2019)
Authors: Karoline Faust
- The Dynamic of a River Model Bacterial Community in Two Different Media Reveals a Divergent Succession and an Enhanced Growth of Most Strains Compared to Monocultures(2019)
Authors: Mathias Bonal, Karoline Faust
Pages: 313 - 323 - Towards a Better Understanding of Microbial Community Dynamics through High-Throughput Cultivation and Data Integration(2019)
Authors: Karoline Faust
- Microbial Consortium Design Benefits from Metabolic Modeling(2019)
Authors: Karoline Faust
Pages: 123 - 125