Researcher
Karoline Faust
- Disciplines:Analysis of next-generation sequence data, Bioinformatics data integration and network biology, Computational biomodelling and machine learning, Development of bioinformatics software, tools and databases, Single-cell data analysis, Community ecology, Microbiomes, Bacteriology, Microbiome
Affiliations
- Laboratory of Molecular Bacteriology (Rega Institute) (Division)
Member
From30 Apr 2014 → Today
Projects
1 - 10 of 15
- Exploration of the factors influencing successful invasion of a synthetic human gut community by probiotic strainsFrom20 Sep 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- PhD: Investigating the response of a synthetic human gut community to perturbationsFrom23 Nov 2021 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Three-dimensional holo’omic landscapes to unveil host-microbiota interactions shaping animal productionFrom1 Sep 2021 → TodayFunding: H2020 - Food security, sustainable agriculture, marine and maritime research and the bio-economy
- Towards development of novel tools for plastic degradation pathway discovery from meta-omics dataFrom10 May 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Parallel mini-bioreactor system boosting human microbial community and phage-biology and -biotechnology researchFrom1 Jan 2021 → 31 Dec 2022Funding: BOF - scientific equipment program
- Microbial community control: from theory to practiceFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- Development of new biodegradable plastics through Daphnia microbiomesFrom1 Oct 2020 → TodayFunding: BOF - projects
- Microbial interactions in hydrogen-oxidizing communitiesFrom10 Jun 2020 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Single-Cell Analysis and Metabolic Modelling of Pairwise Interactions in the Gut MicrobiomeFrom4 Mar 2019 → 4 Jul 2023Funding: Own budget, for example: patrimony, inscription fees, gifts
- Characterization of a thermophilic acidogenic microbial community treating organic waste and producing the high commodity chemical n-caproate using a combination of culturomics and meta-omicsFrom1 Mar 2019 → 30 Nov 2023Funding: Foreign foundations, funds with scientific view
Publications
11 - 20 of 61
- Regime transition Shapes the Composition, Assembly Processes, and Co-occurrence Pattern of Bacterioplankton Community in a Large Eutrophic Freshwater Lake(2022)
Authors: Karoline Faust
Pages: 336 - 350 - Fast quantification of gut bacterial species in cocultures using flow cytometry and supervised classification(2022)
Authors: Charlotte van de Velde, Clémence Joseph, Anais Biclot, Vitor Bernardes Pinheiro, Kristel Bernaerts, Jeroen Raes, Karoline Faust
Pages: 40 - The virota and its transkingdom interactions in the healthy infant gut(2022)
Authors: Gwen Falony, Bert Vanmechelen, Lore Van Espen, Daan Jansen, Piet Maes, Karoline Faust, Marc Van Ranst, Jeroen Raes, Jelle Matthijnssens
- Karoline Faust(2022)
Authors: Karoline Faust
Pages: 3 - 3 - Successional Stages in Infant Gut Microbiota Maturation.(2021)
Authors: Gwen Falony, Lore Van Espen, Karoline Faust, Jelle Matthijnssens
Pages: e0185721 - Successional Stages in Infant Gut Microbiota Maturation(2021)
Authors: Gwen Falony, Daan Jansen, Lore Van Espen, Maria Ioanna Papadaki, Karoline Faust, Marc Van Ranst, Jeroen Raes, Jelle Matthijnssens
- Disentangling environmental effects in microbial association networks(2021)
Authors: Gipsi Lima Mendez, Jeroen Raes, Karoline Faust
- Temporal variability in quantitative human gut microbiome profiles and implications for clinical research(2021)
Authors: Doris Vandeputte, João Guedelha Sabino, Séverine Vermeire, Karoline Faust, Jeroen Raes
- Gut Microbiome Profiling Uncovers a Lower Abundance of Butyricicoccus in Advanced Stages of Chronic Kidney Disease(2021)
Authors: Karoline Faust, Jeroen Raes
- Open challenges for microbial network construction and analysis(2021)
Authors: Karoline Faust
Pages: 3111 - 3118