Researcher
Jan Fostier
- Disciplines:Bio-informatics, Parallel programming, High performance computing, Parallel computing
Affiliations
- Information and Communication Technology Department (Administrative office)
Member
From1 Jan 2010 → 31 Dec 2010 - Department of Information technology (Department)
Member
From1 Sep 2005 → Today
Projects
1 - 7 of 7
- Search schemes for sequence alignmentFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Search schemes for sequence alignment to pan-genome graphs.From1 Nov 2021 → TodayFunding: FWO fellowships
- Search Schemes for Sequence Alignment to Pan-Genome GraphsFrom1 Oct 2021 → 31 Oct 2021Funding: BOF - doctoral mandates
- Accurate Identification of Sequencing Errors using Probabilistic Graphical ModelsFrom1 Oct 2018 → 30 Sep 2022Funding: FWO fellowships
- De novo genome assembly using both second and third generation sequencing dataFrom1 Jan 2014 → 31 Dec 2019Funding: FWO research project (including WEAVE projects)
- Network-based approaches for the identification and mode of action determination of anti-bacterial agentsFrom1 Jan 2013 → 31 Dec 2016Funding: SBO (Strategic basic research)
- Bioinformatics: from nucleotids to networks (N2N)From1 May 2010 → 30 Apr 2017Funding: BOF - Other initiatives
Publications
21 - 30 of 102
- Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations(2015)
Authors: Sergio Pulido Tamayo, Toon Swings, Bram Van den Berghe, Akanksha Dubey, Hans Steenackers, Jan Michiels, Jan Fostier, Kathleen Marchal
- Jabba: Hybrid error correction of long sequencing reads (outstanding presentation award)(2015)
Authors: Mahdi Heydari, Piet Demeester, Jan Fostier
Pages: 1 - Efficient uncertainty quantification of large two-dimensional optical systems with a parallelized stochastic Galerkin method(2015)
Authors: Zdravko Zubac, Jan Fostier, Daniël De Zutter, Dries Vande Ginste
Pages: 30833 - 30850 - Preconditioner for a scattering solver based on the intrusive stochastic Galerkin method accelerated with MLFMM(2015)
Authors: Zdravko Zubac, Jan Fostier, Daniël De Zutter, Dries Vande Ginste
Pages: 14 - 15 - elPrep: high-performance preparation of sequence alignment/map files for variant calling(2015)
Authors: Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Joke Reumers
- Jabba: hybrid error correction for long sequencing reads using maximal exact matches(2015)Volume: 9289
Authors: Giles Miclotte, Mahdi Heydari, Piet Demeester, Pieter Audenaert, Jan Fostier
Pages: 175 - 188 - Solving billions of unknowns using the parallel MLFMA and a Tier 1 supercomputer(2015)
Authors: Jan Fostier, Bart Michiels, Ignace Bogaert, Daniël De Zutter
Number of pages: 1 - BLSSpeller : exhaustive comparative discovery of conserved cis-regulatory elements(2015)
Authors: Jan Van de Velde, Dries Decap, Michiel Van Bel, Piet Demeester, Bart Dhoedt, Klaas Vandepoele, Jan Fostier
Pages: 3758 - 3766 - Pathway relevance ranking for tumor samples through network-based data integration(2015)
Authors: Lieven Verbeke, Ana Carolina Elisa Fierro Gutierrez, Piet Demeester, Jan Fostier, Kathleen Marchal
- Halvade: scalable sequence analysis with MapReduce(2015)
Authors: Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier
Pages: 2482 - 2488
Patents
1 - 1 of 1
- PROCESSING READS OF SEQUENCED NUCLEIC ACID (Inventor)