Researcher
Jan Fostier
- Disciplines:Bio-informatics, Parallel programming, High performance computing, Parallel computing
Affiliations
- Information and Communication Technology Department (Administrative office)
Member
From1 Jan 2010 → 31 Dec 2010 - Department of Information technology (Department)
Member
From1 Sep 2005 → Today
Projects
1 - 7 of 7
- Search schemes for sequence alignmentFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Search schemes for sequence alignment to pan-genome graphs.From1 Nov 2021 → TodayFunding: FWO fellowships
- Search Schemes for Sequence Alignment to Pan-Genome GraphsFrom1 Oct 2021 → 31 Oct 2021Funding: BOF - doctoral mandates
- Accurate Identification of Sequencing Errors using Probabilistic Graphical ModelsFrom1 Oct 2018 → 30 Sep 2022Funding: FWO fellowships
- De novo genome assembly using both second and third generation sequencing dataFrom1 Jan 2014 → 31 Dec 2019Funding: FWO research project (including WEAVE projects)
- Network-based approaches for the identification and mode of action determination of anti-bacterial agentsFrom1 Jan 2013 → 31 Dec 2016Funding: SBO (Strategic basic research)
- Bioinformatics: from nucleotids to networks (N2N)From1 May 2010 → 30 Apr 2017Funding: BOF - Other initiatives
Publications
11 - 20 of 102
- Illumina error correction near highly repetitive DNA regions improves de novo genome assembly(2019)
Authors: Mahdi Heydari, Giles Miclotte, Yves Van de Peer, Jan Fostier
- elPrep 4 : a multithreaded framework for sequence analysis(2019)
Authors: Charlotte Herzeel, Pascal Costanza, Dries Decap, Jan Fostier, Wilfried Verachtert
Pages: 1 - 16 - Dynamical anchoring of distant arrhythmia sources by fibrotic regions via restructuring of the activation pattern(2018)
Authors: Nele Vandersickel, Masaya Watanabe, Qian Tao, Jan Fostier, Katja Zeppenfeld, Alexander Panfilov
- BrownieAligner : accurate alignment of Illumina sequencing data to de Bruijn graphs(2018)
Authors: Mahdi Heydari, Yves Van de Peer, Jan Fostier
- OMSim : a simulator for optical map data(2017)
Authors: Stéphane Plaisance, Stephane Rombauts, Yves Van de Peer, Jan Fostier
Pages: 2740 - 2742 - Halvade-RNA : parallel variant calling from transcriptomic data using MapReduce(2017)
Authors: Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier
- Evaluation of the impact of Illumina error correction tools on de novo genome assembly(2017)
Authors: Mahdi Heydari, Piet Demeester, Yves Van de Peer, Jan Fostier
- Performance analysis of a parallel, multi-node pipeline for DNA sequencing(2016)Volume: 9574
Authors: Dries Decap, Joke Reumers, Charlotte Herzeel, Pascal Costanza, Jan Fostier
Pages: 233 - 242 - Jabba: hybrid error correction for long sequencing reads(2016)
Authors: Mahdi Heydari, Piet Demeester, Stephane Rombauts, Yves Van de Peer, Jan Fostier
Pages: 10 - Full-wave simulations of electromagnetic scattering problems with billions of unknowns(2015)
Authors: Bart Michiels, Jan Fostier, Ignace Bogaert, Daniël De Zutter
Pages: 796 - 799
Patents
1 - 1 of 1
- PROCESSING READS OF SEQUENCED NUCLEIC ACID (Inventor)