Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
1 - 10 of 26
- Unraveling the role of the immune system in the development of exuberant granulation tissue in horse woundsFrom1 Jan 2024 → TodayFunding: BOF - doctoral mandates
- Extracellular vesicles from follicular fluid are key for successful development of fresh and vitrified equine oocytesFrom16 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- qPCR system for NGS library quality control, gene expression measurement, hybridization curve, and melting curve analysisFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Cofunding core facility - Ghent Light Microscopy (GLiM)From1 Jul 2022 → TodayFunding: BOF - research organisations
- Cofunding core facility - UGent NGS CoreFrom1 Jul 2022 → TodayFunding: BOF - research organisations
- Modular high-end mass spectrometer for ultrasensitive quantification and imaging of small organic molecules in cross-health research - MSsmall-XHFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Empirical exploration of novel DNA probes for hybridization to tandem repeatsFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Nanopore sequencing of complete pharmacogenes after CRISPR/Cas9 enrichment in tamoxifen and clopidogrel patients allowing enhanced haplotyping and continuous scale machine learning efficacy prediction.From1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- PEA histone modification proteomicsFrom1 Mar 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciencesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
Publications
41 - 50 of 274
- Enrichment of circulating trophoblasts from maternal blood using filtration-based Metacell (R) technology(2022)
Authors: Jana Weymaere, Ann-Sophie Vander Plaetsen, YASMINE VAN DEN BRANDEN, Eliska Pospisilova, Olivier Tytgat, Dieter Deforce, Filip Van Nieuwerburgh
- Microbial diversity and antimicrobial susceptibility in endotracheal tube biofilms recovered from mechanically ventilated COVID-19 patients(2022)
Authors: Frits van Charante, Anneleen Wieme, Petra Rigole, Evelien De Canck, Lisa Ostyn, Lucia Grassi, Dieter Deforce, Aurélie Crabbé, Peter Vandamme, Marie Joossens, et al.
- Transcriptional dynamics of gametogenesis in the green seaweed Ulva mutabilis identifies an RWP-RK transcription factor linked to reproduction(2022)
Authors: Xiaojie Liu, Jonas Blomme, Kenny Bogaert, Sofie D'hondt, Thomas Wichard, Dieter Deforce, Filip Van Nieuwerburgh, Olivier De Clerck
- Pre-weaning inulin supplementation alters the ileal transcriptome in pigs regarding lipid metabolism(2021)
Authors: Martine Schroyen, Bing Li, Ester Arevalo Sureda, Yuping Zhang, Julie Leblois, Dieter Deforce, Filip Van Nieuwerburgh, Jose Wavreille, Nadia Everaert
- ADAR1 interaction with Z-RNA promotes editing of endogenous double-stranded RNA and prevents MDA5-dependent immune activation(2021)
Authors: Richard de Reuver, Bartosz Wiernicki, Katrien Staes, Ellen De Meester, Tuur Muyldermans, Alexander Botzki, Filip Van Nieuwerburgh, Peter Vandenabeele, Jonathan Maelfait
- Comparative genomics of Flavobacterium columnare unveils novel insights in virulence and antimicrobial resistance mechanisms(2021)
Authors: Laurentijn Tilleman, Yannick Gansemans, Filip Van Nieuwerburgh, Annemieke Smet, Annemie Decostere
- Changes in DNA methylation in Arabidopsis thaliana plants exposed over multiple generations to gamma radiation(2021)
Authors: Pol Laanen, Eline Saenen, Mohamed Mysara, Jorden van de Walle, May Van Hees, Robin Nauts, Filip Van Nieuwerburgh, Stefan Voorspoels, Griet Jacobs, Ann Cuypers, et al.
- Effect of overconditioning on the hepatic global gene expression pattern of dairy cows at the end of pregnancy(2021)
Authors: Osvaldo Américo Bogado Pascottini, Jenne De Koster, Filip Van Nieuwerburgh, Mario Van Poucke, Luc Peelman, Veerle Fievez, J. L. M. R. Leroy, Geert Opsomer
Pages: 8152 - 8163 - MYCN-induced nucleolar stress drives an early senescence-like transcriptional program in hTERT-immortalized RPE cells(2021)
Authors: Sofia Zanotti, Suzanne Vanhauwaert, Christophe Van Neste, Volodimir Olexiouk, Jolien Van Laere, Marlies Verschuuren, Joni Van der Meulen, Liselot Mus, Kaat Durinck, Laurentijn Tilleman, et al.
- Characterization of the inflammatory microenvironment and hepatic macrophage subsets in experimental hepatocellular carcinoma models(2021)
Authors: Helena Degroote, Sander Lefere, Astrid Vandierendonck, Bart Vanderborght, Tim Meese, Filip Van Nieuwerburgh, Anja Geerts
Pages: 562 - 577
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)