Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
1 - 10 of 26
- Unraveling the role of the immune system in the development of exuberant granulation tissue in horse woundsFrom1 Jan 2024 → TodayFunding: BOF - doctoral mandates
- Extracellular vesicles from follicular fluid are key for successful development of fresh and vitrified equine oocytesFrom16 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- qPCR system for NGS library quality control, gene expression measurement, hybridization curve, and melting curve analysisFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Cofunding core facility - Ghent Light Microscopy (GLiM)From1 Jul 2022 → TodayFunding: BOF - research organisations
- Cofunding core facility - UGent NGS CoreFrom1 Jul 2022 → TodayFunding: BOF - research organisations
- Modular high-end mass spectrometer for ultrasensitive quantification and imaging of small organic molecules in cross-health research - MSsmall-XHFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Empirical exploration of novel DNA probes for hybridization to tandem repeatsFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Nanopore sequencing of complete pharmacogenes after CRISPR/Cas9 enrichment in tamoxifen and clopidogrel patients allowing enhanced haplotyping and continuous scale machine learning efficacy prediction.From1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- PEA histone modification proteomicsFrom1 Mar 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciencesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
Publications
21 - 30 of 274
- DNA methylation alterations in fractionally irradiated rats and breast cancer patients receiving radiotherapy(2022)
Authors: Magy Sallam, Mohamed Mysara, Mohammed Abderrafi Benotmane, Anne P. G. Crijns, Daan Spoor, Filip Van Nieuwerburgh, Dieter Deforce, Sarah Baatout, Pieter-Jan Guns, An Aerts, et al.
- Continuous activation of the IL-17F driven inflammatory pathway in acute and chronic digital dermatitis lesions in dairy cattle(2022)
Authors: Peter Geldhof, Richard Ducatelle, Yannick Gansemans, Filip Van Nieuwerburgh, Dieter Deforce, Geert Opsomer
- Transcriptional dynamics and epigenetic regulation of E and ID protein encoding genes during human T cell development(2022)
Authors: Juliette Roels, Jolien Van Hulle, Marieke Lavaert, Anna Kuchmiy, Steven Strubbe, Tom Putteman, Bart Vandekerckhove, Georges Leclercq, Filip Van Nieuwerburgh, Lena Böhme, et al.
- TXNIP promotes human NK cell development but is dispensable for NK cell functionality(2022)
Authors: Sigrid Wahlen, Sylvie Taveirne, Wouter Van Loocke, Els Van Ammel, Filip Van Nieuwerburgh, Tom Taghon, Pieter Van Vlierberghe, Georges Leclercq
- QueSTR probes : Quencher-labeled RNase H2-dependent probes for short tandem repeat genotyping(2022)
Authors: Olivier Tytgat, Sonja Skevin, Maarten Fauvart, Tim Stakenborg, Dieter Deforce, Filip Van Nieuwerburgh
- Hatching is modulated by microRNA-378a-3p derived from extracellular vesicles secreted by blastocysts(2022)
Authors: Krishna Pavani, Tim Meese, Osvaldo Américo Bogado Pascottini, XueFeng Guan, Xiaoyuan Lin, Luc Peelman, Joachim Hamacher, Filip Van Nieuwerburgh, Dieter Deforce, Annekatrien Boel, et al.
- Profiling the aerobic window of horses in response to training by means of a modified lactate minimum speed test : flatten the curve(2022)
Authors: Lorie De Maré, Carmen Vidal Moreno de Vega, Constance De meeûs, Lukas Plancke, Yannick Gansemans, Filip Van Nieuwerburgh, Dieter Deforce, Jean Eduardo de Oliveira, Guilherme Hosotani, Maarten Oosterlinck
- Cas9 targeted nanopore sequencing with enhanced variant calling improves CYP2D6-CYP2D7 hybrid allele genotyping(2022)
Authors: Kaat Rubben, Laurentijn Tilleman, Koen Deserranno, Olivier Tytgat, Dieter Deforce, Filip Van Nieuwerburgh, Guanzheng Luo
- ADAR1 prevents autoinflammation by suppressing spontaneous ZBP1 activation(2022)
Authors: Richard de Reuver, Simon Verdonck, Evelien Dierick, Josephine Nemegeer, Eline Hessmann, Sadeem Ahmad, Maude Jans, Gillian Blancke, Filip Van Nieuwerburgh, Alexander Botzki, et al.
Pages: 784 - 789 - Haplotyping pharmacogenes using TLA combined with Illumina or Nanopore sequencing(2022)
Authors: Laurentijn Tilleman, Kaat Rubben, Dieter Deforce, Filip Van Nieuwerburgh
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)