Researcher
Filip Van Nieuwerburgh
- Keywords:Massively parallel sequencing, Applied bioinformatics
- Disciplines:Pharmogenetics and -genomics, Genetics, Epigenetics, Immunogenetics
Affiliations
- Department of Pharmaceutics (Department)
Member
From1 Sep 1999 → Today
Infrastructure
1 - 1 of 1
- PromethION: nanopore sequencer for DNA and RNA sequencing (Consortium coordinator)
Projects
1 - 10 of 26
- Unraveling the role of the immune system in the development of exuberant granulation tissue in horse woundsFrom1 Jan 2024 → TodayFunding: BOF - doctoral mandates
- Extracellular vesicles from follicular fluid are key for successful development of fresh and vitrified equine oocytesFrom16 Oct 2023 → TodayFunding: BOF - postdoctoral mandates
- qPCR system for NGS library quality control, gene expression measurement, hybridization curve, and melting curve analysisFrom15 Dec 2022 → TodayFunding: BOF - scientific equipment program
- Cofunding core facility - Ghent Light Microscopy (GLiM)From1 Jul 2022 → TodayFunding: BOF - research organisations
- Cofunding core facility - UGent NGS CoreFrom1 Jul 2022 → TodayFunding: BOF - research organisations
- Modular high-end mass spectrometer for ultrasensitive quantification and imaging of small organic molecules in cross-health research - MSsmall-XHFrom1 May 2022 → TodayFunding: FWO Medium Size Research Infrastructure
- Empirical exploration of novel DNA probes for hybridization to tandem repeatsFrom1 Nov 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Nanopore sequencing of complete pharmacogenes after CRISPR/Cas9 enrichment in tamoxifen and clopidogrel patients allowing enhanced haplotyping and continuous scale machine learning efficacy prediction.From1 Oct 2021 → TodayFunding: BOF - doctoral mandates
- PEA histone modification proteomicsFrom1 Mar 2021 → 31 Dec 2023Funding: IOF - technology validation in lab
- Stimulated emission depletion microscopy (STED): Nanoscopy for innovative research in the life sciencesFrom1 May 2020 → TodayFunding: FWO Medium Size Research Infrastructure
Publications
11 - 20 of 274
- Systematic comparison of experimental and human obstructive cholestasis reveals conservation of canonical pathway activation and biomarkers relevant for cholestatic liver disease(2023)
Authors: Eva Gijbels, Kevin De Muynck, Bart Vanderborght, Tim Meese, Filip Van Nieuwerburgh, Anne Hoorens, Mathieu Vinken
Pages: 18 - 21 - Intrathymic dendritic cell-biased precursors promote human T cell lineage specification through IRF8-driven transmembrane TNF(2023)
Authors: Kai Ling Liang, Juliette Roels, Marieke Lavaert, Tom Putteman, Lena Böhme, Laurentijn Tilleman, Imke Velghe, Valentina Pegoretti, Inge Van de Walle, Stephanie Sontag, et al.
Pages: 474 - 486 - Identification of a novel idiopathic epilepsy risk locus and a variant in the CCDC85A gene in the Dutch partridge dog(2023)
Authors: Evy Beckers, Sofie Bhatti, Mario Van Poucke, Ingeborgh Polis, Frédéric Farnir, Filip Van Nieuwerburgh, Paul Mandigers, Luc Van Ham, Luc Peelman, Bart Broeckx
- Effects of biologics treatment in type 2-high chronic rhinosinusitis with nasal polyp patients(2023)Volume: 151
Authors: Sharon Van Nevel, Tim Meese, Gabriële Holtappels, Natalie De Ruyck, Stijn Vanhee, Nan Zhang, Filip Van Nieuwerburgh, Claus Bachert
Pages: AB187 - AB187 - How do engineered Yarrowia lipolytica strains secrete free fatty acids : hints from comparative transcriptomics(2023)
Authors: José Manuel Salvador López, Lea Vidal, Michelle Patricia, Filip Van Nieuwerburgh, Dieter Deforce, Jean-Marc Nicaud, Inge Van Bogaert
- Guar gum as galactomannan source induces dysbiosis and reduces performance in broiler chickens and dietary β-mannanase restores the gut homeostasis(2023)
Authors: Marielen De Souza, Venessa Eeckhaut, Evy Goossens, Richard Ducatelle, Filip Van Nieuwerburgh, Karl Poulsen, Ana Angelita Sampaio Baptista, Ana Paula Frederico Rodrigues Loureiro Bracarense, Filip Van Immerseel
- The multi-omics single-cell landscape of sinus mucosa in uncontrolled severe chronic rhinosinusitis with nasal polyps(2023)
Authors: Zhaofeng Xu, Yanran Huang, Tim Meese, Sharon Van Nevel, Gabriële Holtappels, Stijn Vanhee, Barbara M. Bröker, Zhengqi Li, Ellen De Meester, Natalie De Ruyck, et al.
- Severe udder cleft dermatitis lesion transcriptomics points to an impaired skin barrier, defective wound repair and a dysregulated inflammatory response as key elements in the pathogenesis(2023)
Authors: Anne-Sofie Vermeersch, Mohsin Ali, Yannick Gansemans, Filip Van Nieuwerburgh, Peter Geldhof, Richard Ducatelle, Dieter Deforce, Jozefien Callens, Geert Opsomer, Christophe Egles
Pages: e0288347 - Molecular analysis of broad-spectrum induced resistance in rice by the green leaf volatile Z-3-hexenyl acetate(2023)
Authors: Willem Desmedt, Maarten Ameye, Osvaldo Filipe, Evelien De Waele, Filip Van Nieuwerburgh, Dieter Deforce, Lieven Van Meulebroek, Lynn Vanhaecke, Tina Kyndt, Monica Höfte, et al.
Pages: 6804 - 6819 - RIPK1 kinase-dependent inflammation and cell death contribute to the pathogenesis of COPD(2023)
Authors: Hannelore Van Eeckhoutte, Chantal Donovan, Richard Y. Kim, Thomas M. Conlon, Meshal Ansari, Haroon Khan, Ranjith Jayaraman, Nicole G. Hansbro, Yves Dondelinger, Tom Delanghe, et al.
Patents
1 - 2 of 2
- Hydrolysis-based probe and method for STR genotyping (Inventor)
- Probe and method for STR-genotyping (Inventor)