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A semiparametric unified approach for the detection of differential gene expression in microarrays

Book Contribution - Book Abstract Conference Contribution

A general method is proposed for detecting differential genes in high density oligonucleotide microarrays. It is a unified approach in the sense that it integrates the three preprocessing steps and the statistical testing methods into one semiparametric model. An important characteristic is that no stringent assumptions are imposed on the background correction and normalization steps. Instead of focusing on mean differences in gene expression, we formulate the model in terms of stochastic ordering. In particular, probabilities $P(Y_1 < Y_2 )$, with $Y_i$ the intensity of a gene in group $i$ ($i = 1, 2$), are modeled in terms of predictor variables. We present some theoretical results and spike-in studies are considered for comparing the performance of this new method with existing methods. Finally we apply the new method to a publicly available data set.
Book: Joint Statistical Meetings, Abstracts
Number of pages: 1
Publication year:2009