Researcher
Tim Heupink
- Keywords:Medicine
- Disciplines:Analysis of next-generation sequence data, Computational evolutionary biology, comparative genomics and population genomics
Affiliations
- Global Health Institute (GHI) (Research group)
Member
From1 Jan 2019 → Today - Epidemiology and social medicine (ESOC) (Research group)
Member
From1 Oct 2016 → 31 Dec 2018
Projects
1 - 2 of 2
- Mycobacterium Tuberculosis transmission dynamics among university students in Ethiopia: a whole genome sequencing study.From1 Jan 2019 → 28 Jan 2022Funding: VLIR-UOS Global Minds
- Hyperendemic M. tuberculosis from a hypertemporal genomic perspective (HyperMTB).From1 May 2018 → 30 Apr 2019Funding: BOF - Other initiatives
Publications
1 - 10 of 16
- The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples(2023)
Authors: Tim Heupink, Lennert Verboven, Abhinav Sharma, Miguel de Diego Fuertes, Robin M. Warren, Annelies Van Rie
Pages: 1 - 24 - Optimizing liquefaction and decontamination of sputum for DNA extraction from Mycobacterium tuberculosis(2022)
Authors: Anzaan Dippenaar, Nabila Ismail, Melanie Grobbelaar, Selien Oostvogels, Margaretha de Vos, Elizabeth M. Streicher, Tim Heupink, Annelies Van Rie, Robin M. Warren
- Sequencing Mycobacteria and Algorithm-determined Resistant Tuberculosis Treatment (SMARTT)(2022)
Authors: Annelies Van Rie, Elise De Vos, Emilyn Costa, Lennert Verboven, Felex Ndebele, Tim Heupink, Steven Abrams, Noriah Maraba, Heeran Makkan, Trevor Beattie, et al.
Pages: 1 - 15 - Transmission, distribution and drug resistance-conferring mutations of extensively drug-resistant tuberculosis in the Western Cape Province, South Africa(2022)
Authors: Selien Oostvogels, Serej D. Ley, Tim Heupink, Anzaan Dippenaar, Elizabeth M. Streicher, Elise De Vos, Conor J. Meehan, Keertan Dheda, Rob Warren, Annelies Van Rie
Pages: 1 - 13 - Variants in bedaquiline-candidate-resistance genes(2022)
Authors: Emmanuel Rivière, Lennert Verboven, Anzaan Dippenaar, Sander Goossens, Elise De Vos, Elizabeth Streicher, Bart Cuypers, Kris Laukens, Fathia Ben-Rached, Timothy C. Rodwell, et al.
Pages: 1 - 12 - TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis(2022)
Authors: Lennert Verboven, Jody Phelan, Tim Heupink, Annelies Van Rie
Pages: 1 - 15 - Comparative performance of genomic methods for the detection of pyrazinamide resistance and heteroresistance in Mycobacterium tuberculosis(2022)
Authors: Michael G. Whitfield, David M. Engelthaler, Christopher Allender, Megan Folkerts, Tim Heupink, Jason Limberis, Robin M. Warren, Annelies Van Rie, John Z. Metcalfe
- Detection of minor variants in Mycobacterium tuberculosis whole genome sequencing data(2021)
Authors: Sander Goossens, Tim Heupink, Elise De Vos, Anzaan Dippenaar, Margaretha De Vos, Rob Warren, Annelies Van Rie
Pages: 1 - 9 - Comprehensive and accurate genetic variant identification from contaminated and low-coverage **Mycobacterium tuberculosis** whole genome sequencing data(2021)
Authors: Tim Heupink, Robin M. Warren, Annelies Van Rie
- Capacity building for whole genome sequencing of Mycobacterium tuberculosis and bioinformatics in high TB burden countries(2021)
Authors: Emmanuel Riviere, Tim Heupink, Nabila Ismail, Anzaan Dippenaar, Charlene Clarke, Gemeda Abebe, Peter Heusden, Rob Warren, Conor J. Meehan, Annelies Van Rie