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Researcher
Karoline Faust
- Disciplines:Analysis of next-generation sequence data, Bioinformatics data integration and network biology, Computational biomodelling and machine learning, Development of bioinformatics software, tools and databases, Single-cell data analysis, Community ecology, Microbiomes, Bacteriology, Microbiome
Affiliations
- Laboratory of Molecular Bacteriology (Rega Institute) (Division)
Member
From30 Apr 2014 → Today
Projects
1 - 10 of 15
- Exploration of the factors influencing successful invasion of a synthetic human gut community by probiotic strainsFrom20 Sep 2023 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- PhD: Investigating the response of a synthetic human gut community to perturbationsFrom23 Nov 2021 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Three-dimensional holo’omic landscapes to unveil host-microbiota interactions shaping animal productionFrom1 Sep 2021 → TodayFunding: H2020 - Food security, sustainable agriculture, marine and maritime research and the bio-economy
- Towards development of novel tools for plastic degradation pathway discovery from meta-omics dataFrom10 May 2021 → TodayFunding: FWO Strategic Basic Research Grant
- Parallel mini-bioreactor system boosting human microbial community and phage-biology and -biotechnology researchFrom1 Jan 2021 → 31 Dec 2022Funding: BOF - scientific equipment program
- Microbial community control: from theory to practiceFrom1 Jan 2021 → TodayFunding: FWO research project (including WEAVE projects)
- Development of new biodegradable plastics through Daphnia microbiomesFrom1 Oct 2020 → TodayFunding: BOF - projects
- Microbial interactions in hydrogen-oxidizing communitiesFrom10 Jun 2020 → TodayFunding: Own budget, for example: patrimony, inscription fees, gifts
- Single-Cell Analysis and Metabolic Modelling of Pairwise Interactions in the Gut MicrobiomeFrom4 Mar 2019 → 4 Jul 2023Funding: Own budget, for example: patrimony, inscription fees, gifts
- Characterization of a thermophilic acidogenic microbial community treating organic waste and producing the high commodity chemical n-caproate using a combination of culturomics and meta-omicsFrom1 Mar 2019 → 30 Nov 2023Funding: Foreign foundations, funds with scientific view
Publications
1 - 10 of 61
- Predicting microbial interactions with approaches based on flux balance analysis: an evaluation(2024)
Authors: Haris Zafeiropoulos, Kristel Bernaerts, Karoline Faust
- Technical versus biological variability in a synthetic human gut community(2023)
Authors: Charlotte van de Velde, Clémence Joseph, Jeroen Raes, Kristel Bernaerts, Karoline Faust
- Characterization of a thermophilic acidogenic microbial community treating organic waste and producing the high commodity chemical n-caproate using a combination of culturomics and meta-omics(2023)
Authors: Tinh Nguyen Van, Dirk Springael, Kristel Bernaerts, Karoline Faust
- Study of microbial interaction networks among heterotrophic bacteria from river waters(2023)
Authors: Mathias Bonal, Karoline Faust
- Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis(2023)
Authors: Kristel Bernaerts, Karoline Faust
Pages: 1940 - 1952 - Deciphering Interactions Within a 4-Strain Riverine Bacterial Community(2023)
Authors: Mathias Bonal, Clémence Joseph, Karoline Faust
- Thermocaproicibacter melissae gen. nov., sp. nov., a thermophilic chain-elongating bacterium, producing n-caproate from polymeric carbohydrates(2023)
Authors: Tinh Nguyen Van, Ilse Smets, Kristel Bernaerts, Karoline Faust, Rob Lavigne, Dirk Springael
- Exploration of human gut microbial dynamics in vitro(2023)
Authors: Charlotte van de Velde, Karoline Faust, Jeroen Raes, Kristel Bernaerts
- Isolation and characterization of a thermophilic chain elongating bacterium that produces the high commodity chemical n-caproate from polymeric carbohydrates(2023)
Authors: Ilse Smets, Kristel Bernaerts, Karoline Faust, Rob Lavigne, Dirk Springael
- Tick microbial associations at the crossroad of horizontal and vertical transmission pathways(2022)
Authors: Karoline Faust